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The map label for this gene is yqxC [H]

Identifier: 125624485

GI number: 125624485

Start: 1662446

End: 1663252

Strand: Reverse

Name: yqxC [H]

Synonym: llmg_1687

Alternate gene names: 125624485

Gene position: 1663252-1662446 (Counterclockwise)

Preceding gene: 125624486

Following gene: 125624484

Centisome position: 65.75

GC content: 38.66

Gene sequence:

>807_bases
ATGAAAGAAAGAATTGACGTACTTGCCACAAATCAAGGACTTTTTGAAACACGGGAACAAGCCAAAAGAGGAGTAATGGC
GGGTTTAGTTGTTGATAGTAAGTCTGGGGAACGTTATGATAAACCTGGTCAAAAAATTGATGATGGAACGGAACTCCGAC
TTAAAGGTGAAAAATTACGATATGTTAGTCGAGGAGGGTTAAAATTAGAAAAAGCGCTCAAAGAATTTAATATAAAAATT
GAAGGAAAAACGTGTCTTGATATTGGATCATCAACGGGAGGATTTACTGATGTGATGCTCCAAAATGGAGCAAAATTAGT
GTATGCTTTAGATGTTGGAACCAATCAGTTGGCTTGGAAAATTCGCTCTGATGAACGAGTCGTTGTGATGGAACAATTTA
ATTTTCGTAATGCCCTTCTAAGCGATTTTGAGCAAGGAAGACCGGCCTTTACAAGCATTGATGTCAGTTTTATCTCACTG
GAGTTAATTCTCCCACCCCTTTATGAAATTTTAGAAGAAGGTGGAGAAGTAGCTGCACTTATTAAGCCGCAATTTGAAGC
CGGACGTGAGCAAGTCGGAAAAAACGGAATTATCCGCGACCCAAAAGTTCACAAAATGACCATTGAAAAAGTTTTAGCAG
CAGCGACTCGCCTTGGATTATCAATAAAAGGCTTGACCTTTTCACCAATCAAGGGAGGAGCTGGAAACGTCGAATTTCTT
GTCCATTTACTTAAAGATGGAAAAGCCGAAATATCTCAGCAGATTAATATTGAATCAGTTTTACAAGAAGAAAGCGAAGA
ACTATGA

Upstream 100 bases:

>100_bases
GATGAGATTAAATCTAAGGGACTGAACCAATTTTTATATAAAAATTGATGATTATTGGTTACATTTTTAGAAAAAATACG
TATAATAAAGAAAGATACAA

Downstream 100 bases:

>100_bases
AAAGAGAAGAACGATTAAACTTTATTGCTCAATTTATCCGAGAAAATGAAATTAAAACTCAAGAAGAACTTGTGAATACC
CTTTTAACTCATGGAATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKERIDVLATNQGLFETREQAKRGVMAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFNIKI
EGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNALLSDFEQGRPAFTSIDVSFISL
ELILPPLYEILEEGGEVAALIKPQFEAGREQVGKNGIIRDPKVHKMTIEKVLAAATRLGLSIKGLTFSPIKGGAGNVEFL
VHLLKDGKAEISQQINIESVLQEESEEL

Sequences:

>Translated_268_residues
MKERIDVLATNQGLFETREQAKRGVMAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFNIKI
EGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNALLSDFEQGRPAFTSIDVSFISL
ELILPPLYEILEEGGEVAALIKPQFEAGREQVGKNGIIRDPKVHKMTIEKVLAAATRLGLSIKGLTFSPIKGGAGNVEFL
VHLLKDGKAEISQQINIESVLQEESEEL
>Mature_268_residues
MKERIDVLATNQGLFETREQAKRGVMAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFNIKI
EGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNALLSDFEQGRPAFTSIDVSFISL
ELILPPLYEILEEGGEVAALIKPQFEAGREQVGKNGIIRDPKVHKMTIEKVLAAATRLGLSIKGLTFSPIKGGAGNVEFL
VHLLKDGKAEISQQINIESVLQEESEEL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29579; Mature: 29579

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS00014 ER_TARGET ; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERIDVLATNQGLFETREQAKRGVMAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLR
CCCCEEEEECCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEE
YVSRGGLKLEKALKEFNIKIEGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWK
EECCCCCHHHHHHHHCCEEECCCEEEECCCCCCCHHHHHECCCCEEEEEEECCCCEEEEE
IRSDERVVVMEQFNFRNALLSDFEQGRPAFTSIDVSFISLELILPPLYEILEEGGEVAAL
ECCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEHEEEEEEHHHHHHHHHHHCCCCEEEE
IKPQFEAGREQVGKNGIIRDPKVHKMTIEKVLAAATRLGLSIKGLTFSPIKGGAGNVEFL
ECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCEECCCCCCCCCHHHH
VHLLKDGKAEISQQINIESVLQEESEEL
HHHHHCCHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKERIDVLATNQGLFETREQAKRGVMAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLR
CCCCEEEEECCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEE
YVSRGGLKLEKALKEFNIKIEGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWK
EECCCCCHHHHHHHHCCEEECCCEEEECCCCCCCHHHHHECCCCEEEEEEECCCCEEEEE
IRSDERVVVMEQFNFRNALLSDFEQGRPAFTSIDVSFISLELILPPLYEILEEGGEVAAL
ECCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEHEEEEEEHHHHHHHHHHHCCCCEEEE
IKPQFEAGREQVGKNGIIRDPKVHKMTIEKVLAAATRLGLSIKGLTFSPIKGGAGNVEFL
ECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCEECCCCCCCCCHHHH
VHLLKDGKAEISQQINIESVLQEESEEL
HHHHHCCHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]