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The map label for this gene is traD [H]

Identifier: 125624199

GI number: 125624199

Start: 1356872

End: 1358710

Strand: Reverse

Name: traD [H]

Synonym: llmg_1383

Alternate gene names: 125624199

Gene position: 1358710-1356872 (Counterclockwise)

Preceding gene: 125624200

Following gene: 125624198

Centisome position: 53.72

GC content: 37.9

Gene sequence:

>1839_bases
ATGAAAAATCAAAATGATAATCAACCTTATAAGAAAAAGTTTAAACCCTACTTGATATTGTCAGGATTCCTTTTTATTTT
AGGTTTTGCGATAGGTAATTTCTTCTGGATGTTACCTGGAGATTCAATCTATAGTAAGGAAATTTTTCTAACAAGCGGAG
ACCTGTTAGGTTACTTTAATAAAGAACTCTGGCATTTCTTCTATCATCCTTCCTTTGCAGCTCTCGTATGTGGAGTTGTT
TTCTTTTTGGTTGGGATGTTAATGTTTGTCTATAATAATGATTCAGGAATTTATCGAACAAACGTGGAACATGGTTCTGC
TCGATTAGCAAAAGAGGAAGAGTTAGAAAAATATAGAGACCCAGAACCTGAGAATAATAAAATTTTAAGTAAAAATGTTC
AAATGGGACTCTTTAATGATCGTCTCCCTCAAAAGGTTCAAAAAAATAAGAGTGATATGGTTTTAGGTGACTCTGGAGCT
GCAAAAACCTTGGCACTTATTATGACGAATATTATGCAGCTCAATGCCTCCTTTGTGATTACTGACCCTGATGGTGGGCT
TGTTTATCGTGTTGGTGCAATGCTGAAAAAAGCAAAGTATAACATCAAAATATTAGACTTAAATACCTTGACCAATAGCG
ACACGTTCAATATCTTTAACTATATTAAAACTGAGCTGGATATTGACCGAGTTCTTGAGGCAATTACTGAAGGAACAAAA
AGTAGTGATAATCAAGGGGAAGATTTTTGGGTCAAGGCTGAAGCACTTCTTGTACGTGCAATTATCGCCTACCTCTGGTT
TGACGGAAAAGATAACAATTACACCCCTCATTTGGGAATGATTTCTGACATGTTGAGATATCTGGAGAGAGATGACCCTA
AAAAGCCGAGTCCAGTTGAAGAATTGTTTGATGAGCAAAATAAGCTCCATCCTGATAACTATGCTTATCGCCAATGGTCG
CTTTTTAATGACCTTTATAAATCAGAAACTCGTGCGAGTGTCCTTGGAATTGCGGCCTCACGCTACTCTGTCTTTGACCA
TGATCAACTGAGAGATATGATTCGTCACGATTCTATGGATATTGAGTCATGGAACGAAGAAAAAACAGCCGTATTTATTG
CCATTCCAGAAACAAGTAAGTCGTTTAACTTTATTGCCAATATTTTTCTGGCAACGATTATGGAAACATTGCGTGCGAAG
TCAGACCGAATCAGGCTTGGTAGGGAACAATTAGCTCCTGGGAAAAAACTTTTGCACGTGCGTTTTCTAATTGATGAGTT
CGCCAATATTGGTAAGATTGCCAACTTTGAAGAGGCTTTAGCTACATTCCGTAAACGTGAGATGTCATTCATGGTTATTC
TTCAGTCCCTGGCGCAGCTTAAAAAAATGTATAAAAATAACTGGGAAGAAATCGTTGATAACTGTGCAAGCCTTATTTAC
TTGGGGGGAGATGACCCAAAGACTTTAGAGTTTTTATCTAAACGTTTAGGGAAACAAACCATTTCTCTTAGAAAGCATAG
CATTTCTAAAGGTGGTAGTGGCGGAGGTTCTGAAAGTCGAGATAAAACTGGCCGTGACCTTATGATGGGAGACGAAATCG
CCACTATTGACGGCGATGAGTGCCTCGTATTCATAAAAAAAGAACGTGGCTTCCTTGACCGCAAATATTATGCCTATGAA
CATCCTAGAGCTGATGAATTGGCTAGAAATCCAGGGGATAAAAATTGGTTTAACTATCGCCGTTACATGAATGAAGAAGA
AAAATTGCTTGATGATGTGCGACGTGGCGCTACTATTTTAAATGATCATGGAATGATTCAATCTGAAATTCCTGCTTAA

Upstream 100 bases:

>100_bases
TGACCTTTGAACAGCGATTAAAATATGTTAAGGAAAACAAACAATTTAAAGGAGACCTTTCAAAAATACCTTCAGTTAAA
GCTCCAATGAAAGGAAAAGG

Downstream 100 bases:

>100_bases
ACATTAAAAAAAGAAGAGGGAACAAATGGAAAAACTAGAGAATCCGAATTTAAACCAGGCTTTAGATAATTTACAACAAT
CAAAAGCACTCAATAGCCAA

Product: conjugal transfer protein TraD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 612; Mature: 612

Protein sequence:

>612_residues
MKNQNDNQPYKKKFKPYLILSGFLFILGFAIGNFFWMLPGDSIYSKEIFLTSGDLLGYFNKELWHFFYHPSFAALVCGVV
FFLVGMLMFVYNNDSGIYRTNVEHGSARLAKEEELEKYRDPEPENNKILSKNVQMGLFNDRLPQKVQKNKSDMVLGDSGA
AKTLALIMTNIMQLNASFVITDPDGGLVYRVGAMLKKAKYNIKILDLNTLTNSDTFNIFNYIKTELDIDRVLEAITEGTK
SSDNQGEDFWVKAEALLVRAIIAYLWFDGKDNNYTPHLGMISDMLRYLERDDPKKPSPVEELFDEQNKLHPDNYAYRQWS
LFNDLYKSETRASVLGIAASRYSVFDHDQLRDMIRHDSMDIESWNEEKTAVFIAIPETSKSFNFIANIFLATIMETLRAK
SDRIRLGREQLAPGKKLLHVRFLIDEFANIGKIANFEEALATFRKREMSFMVILQSLAQLKKMYKNNWEEIVDNCASLIY
LGGDDPKTLEFLSKRLGKQTISLRKHSISKGGSGGGSESRDKTGRDLMMGDEIATIDGDECLVFIKKERGFLDRKYYAYE
HPRADELARNPGDKNWFNYRRYMNEEEKLLDDVRRGATILNDHGMIQSEIPA

Sequences:

>Translated_612_residues
MKNQNDNQPYKKKFKPYLILSGFLFILGFAIGNFFWMLPGDSIYSKEIFLTSGDLLGYFNKELWHFFYHPSFAALVCGVV
FFLVGMLMFVYNNDSGIYRTNVEHGSARLAKEEELEKYRDPEPENNKILSKNVQMGLFNDRLPQKVQKNKSDMVLGDSGA
AKTLALIMTNIMQLNASFVITDPDGGLVYRVGAMLKKAKYNIKILDLNTLTNSDTFNIFNYIKTELDIDRVLEAITEGTK
SSDNQGEDFWVKAEALLVRAIIAYLWFDGKDNNYTPHLGMISDMLRYLERDDPKKPSPVEELFDEQNKLHPDNYAYRQWS
LFNDLYKSETRASVLGIAASRYSVFDHDQLRDMIRHDSMDIESWNEEKTAVFIAIPETSKSFNFIANIFLATIMETLRAK
SDRIRLGREQLAPGKKLLHVRFLIDEFANIGKIANFEEALATFRKREMSFMVILQSLAQLKKMYKNNWEEIVDNCASLIY
LGGDDPKTLEFLSKRLGKQTISLRKHSISKGGSGGGSESRDKTGRDLMMGDEIATIDGDECLVFIKKERGFLDRKYYAYE
HPRADELARNPGDKNWFNYRRYMNEEEKLLDDVRRGATILNDHGMIQSEIPA
>Mature_612_residues
MKNQNDNQPYKKKFKPYLILSGFLFILGFAIGNFFWMLPGDSIYSKEIFLTSGDLLGYFNKELWHFFYHPSFAALVCGVV
FFLVGMLMFVYNNDSGIYRTNVEHGSARLAKEEELEKYRDPEPENNKILSKNVQMGLFNDRLPQKVQKNKSDMVLGDSGA
AKTLALIMTNIMQLNASFVITDPDGGLVYRVGAMLKKAKYNIKILDLNTLTNSDTFNIFNYIKTELDIDRVLEAITEGTK
SSDNQGEDFWVKAEALLVRAIIAYLWFDGKDNNYTPHLGMISDMLRYLERDDPKKPSPVEELFDEQNKLHPDNYAYRQWS
LFNDLYKSETRASVLGIAASRYSVFDHDQLRDMIRHDSMDIESWNEEKTAVFIAIPETSKSFNFIANIFLATIMETLRAK
SDRIRLGREQLAPGKKLLHVRFLIDEFANIGKIANFEEALATFRKREMSFMVILQSLAQLKKMYKNNWEEIVDNCASLIY
LGGDDPKTLEFLSKRLGKQTISLRKHSISKGGSGGGSESRDKTGRDLMMGDEIATIDGDECLVFIKKERGFLDRKYYAYE
HPRADELARNPGDKNWFNYRRYMNEEEKLLDDVRRGATILNDHGMIQSEIPA

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014135
- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 70432; Mature: 70432

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQNDNQPYKKKFKPYLILSGFLFILGFAIGNFFWMLPGDSIYSKEIFLTSGDLLGYFN
CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCEECCEEEEECCCHHHHHH
KELWHFFYHPSFAALVCGVVFFLVGMLMFVYNNDSGIYRTNVEHGSARLAKEEELEKYRD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHHCC
PEPENNKILSKNVQMGLFNDRLPQKVQKNKSDMVLGDSGAAKTLALIMTNIMQLNASFVI
CCCCCCCEECCCCCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCEEE
TDPDGGLVYRVGAMLKKAKYNIKILDLNTLTNSDTFNIFNYIKTELDIDRVLEAITEGTK
ECCCCCEEHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC
SSDNQGEDFWVKAEALLVRAIIAYLWFDGKDNNYTPHLGMISDMLRYLERDDPKKPSPVE
CCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
ELFDEQNKLHPDNYAYRQWSLFNDLYKSETRASVLGIAASRYSVFDHDQLRDMIRHDSMD
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
IESWNEEKTAVFIAIPETSKSFNFIANIFLATIMETLRAKSDRIRLGREQLAPGKKLLHV
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCCCCHHHHHH
RFLIDEFANIGKIANFEEALATFRKREMSFMVILQSLAQLKKMYKNNWEEIVDNCASLIY
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEE
LGGDDPKTLEFLSKRLGKQTISLRKHSISKGGSGGGSESRDKTGRDLMMGDEIATIDGDE
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCC
CLVFIKKERGFLDRKYYAYEHPRADELARNPGDKNWFNYRRYMNEEEKLLDDVRRGATIL
EEEEEECCCCCCCCCCEECCCCCHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCEEE
NDHGMIQSEIPA
CCCCCCCCCCCC
>Mature Secondary Structure
MKNQNDNQPYKKKFKPYLILSGFLFILGFAIGNFFWMLPGDSIYSKEIFLTSGDLLGYFN
CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCCEECCEEEEECCCHHHHHH
KELWHFFYHPSFAALVCGVVFFLVGMLMFVYNNDSGIYRTNVEHGSARLAKEEELEKYRD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHHCC
PEPENNKILSKNVQMGLFNDRLPQKVQKNKSDMVLGDSGAAKTLALIMTNIMQLNASFVI
CCCCCCCEECCCCCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCEEE
TDPDGGLVYRVGAMLKKAKYNIKILDLNTLTNSDTFNIFNYIKTELDIDRVLEAITEGTK
ECCCCCEEHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC
SSDNQGEDFWVKAEALLVRAIIAYLWFDGKDNNYTPHLGMISDMLRYLERDDPKKPSPVE
CCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
ELFDEQNKLHPDNYAYRQWSLFNDLYKSETRASVLGIAASRYSVFDHDQLRDMIRHDSMD
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
IESWNEEKTAVFIAIPETSKSFNFIANIFLATIMETLRAKSDRIRLGREQLAPGKKLLHV
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCCCCHHHHHH
RFLIDEFANIGKIANFEEALATFRKREMSFMVILQSLAQLKKMYKNNWEEIVDNCASLIY
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEE
LGGDDPKTLEFLSKRLGKQTISLRKHSISKGGSGGGSESRDKTGRDLMMGDEIATIDGDE
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCC
CLVFIKKERGFLDRKYYAYEHPRADELARNPGDKNWFNYRRYMNEEEKLLDDVRRGATIL
EEEEEECCCCCCCCCCEECCCCCHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCEEE
NDHGMIQSEIPA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]