Click here to switch to the map view.

The map label for this gene is yubA [H]

Identifier: 125624132

GI number: 125624132

Start: 1283043

End: 1284215

Strand: Reverse

Name: yubA [H]

Synonym: llmg_1311

Alternate gene names: 125624132

Gene position: 1284215-1283043 (Counterclockwise)

Preceding gene: 125624133

Following gene: 125624131

Centisome position: 50.77

GC content: 35.89

Gene sequence:

>1173_bases
ATGGAACAAGAACAACACCGCAGTTTTAAAGCCTCTTGGTTTTTCAAGTGGTTCATTAATAATAAAGTCGTTGCAAGTTT
AGCGATTGTCCTTCTCTTTTTATTGAATATTTTATTACTCAATAAAGTTGGATTCATTTTTAAACCTGTCGGAGAATTTA
TTACAGTCATTTCGCTGCCCGTTATTTTGGCAGCCGTATTTTATTATCTTCTTAACCCAATTGTTGATTTTTTGGAAAAA
AGACGAGTTCCGCGTGTGCTGACAATTATTGTCCTTTTCTTAATTATCGCAGCTTTGATTGCTTGGGGCTTAATTGTTGC
TATTCCAAATGTTATCAGTGGAGTAGACAATTTCGCGTCATCGGTCCCTCATTATGTTAACACTGCCCAAAAAGAGATTA
ATGCTTTAGCAAAAAATCCACACTTTGAGCAATTCCGACCACAAGTTGACCAATTTGCCAAATCAATTGGGAATCAATTG
ATTGATTGGTCAAAAACTTTCTCTGTTAATGCCGTAACGACTCTTTCACATCTCATCAGTAAAACTACAAGTATTTTGAT
TTCTTTGATTGTCTTCCCATTTGTTCTTTTTTACTTGTTAAGAGATGGTCAAAGATTAAATGGCTTTATCACTCATTTAT
TGCCCAATGATTGGCGTAAAGAAACATCAAAAGTCTTGCATGAAATTAATAGTCAACTTTCAAATTATGTGCGTGGTCAA
GTCTTAGTTGCCATTGCTGTTGCCATTATGTTCATGATCGGGTTACCAATTATTGGATTGCGCTATGCAGTAGCCTTGGC
AATTACAGCAGGTTTCTTGAACTTAGTTCCATTTTTAGGCTCATTTTTAGCCGCTATTCCAATGGTAATCGTTGGTTTAG
CGATTGGTGGACCTTTGATGCTTGTAAAAGTAATCATTGTTCTTATCATTGAGCAAACTCTTGAAGGGCGCTTTATTTCT
CCTTTGGTTCTTGGAAAACAAATGTCAATCCATCCGATTACGATTTTATTTGTTTTACTGACAGCTGGTCAAATCTTAGG
AGTTTGGGGAGTTCTACTTGCGATTCCATTTTATGCAACACTCAAAGTGATTATTGTTCACGTTTATGAATGGTATCGTG
AAATTTCAGTCCTTTATCGTGAAGAAACAGCTACAGAAGAAGCTAAAGAGTAA

Upstream 100 bases:

>100_bases
AGATTCAATATTATGAACTTGAAAAAAATTACTGACAGGCTCCTCTTGGAACTTATTGACAAGTCTGTCAGTAATTCTAA
AATAAGAATTAGGAAAAATT

Downstream 100 bases:

>100_bases
TTAATAGAATAAAAAATAAGGAGAAAAATGTCATATTCAGAAGATACAATTGACTTTTTACATCAGGGAGACCTGATTGG
AATGCAAAATTCACTTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MEQEQHRSFKASWFFKWFINNKVVASLAIVLLFLLNILLLNKVGFIFKPVGEFITVISLPVILAAVFYYLLNPIVDFLEK
RRVPRVLTIIVLFLIIAALIAWGLIVAIPNVISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQL
IDWSKTFSVNAVTTLSHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLHEINSQLSNYVRGQ
VLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGLAIGGPLMLVKVIIVLIIEQTLEGRFIS
PLVLGKQMSIHPITILFVLLTAGQILGVWGVLLAIPFYATLKVIIVHVYEWYREISVLYREETATEEAKE

Sequences:

>Translated_390_residues
MEQEQHRSFKASWFFKWFINNKVVASLAIVLLFLLNILLLNKVGFIFKPVGEFITVISLPVILAAVFYYLLNPIVDFLEK
RRVPRVLTIIVLFLIIAALIAWGLIVAIPNVISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQL
IDWSKTFSVNAVTTLSHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLHEINSQLSNYVRGQ
VLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGLAIGGPLMLVKVIIVLIIEQTLEGRFIS
PLVLGKQMSIHPITILFVLLTAGQILGVWGVLLAIPFYATLKVIIVHVYEWYREISVLYREETATEEAKE
>Mature_390_residues
MEQEQHRSFKASWFFKWFINNKVVASLAIVLLFLLNILLLNKVGFIFKPVGEFITVISLPVILAAVFYYLLNPIVDFLEK
RRVPRVLTIIVLFLIIAALIAWGLIVAIPNVISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQL
IDWSKTFSVNAVTTLSHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLHEINSQLSNYVRGQ
VLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGLAIGGPLMLVKVIIVLIIEQTLEGRFIS
PLVLGKQMSIHPITILFVLLTAGQILGVWGVLLAIPFYATLKVIIVHVYEWYREISVLYREETATEEAKE

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=375, Percent_Identity=27.4666666666667, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082271, Length=311, Percent_Identity=23.1511254019293, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 43690; Mature: 43690

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQEQHRSFKASWFFKWFINNKVVASLAIVLLFLLNILLLNKVGFIFKPVGEFITVISLP
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILAAVFYYLLNPIVDFLEKRRVPRVLTIIVLFLIIAALIAWGLIVAIPNVISGVDNFAS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNAVTTLSHLIS
HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHH
KTTSILISLIVFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLHEINSQLSNYVRGQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGLAIGGPLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILGVWGVLLAIPFYAT
HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKVIIVHVYEWYREISVLYREETATEEAKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEQEQHRSFKASWFFKWFINNKVVASLAIVLLFLLNILLLNKVGFIFKPVGEFITVISLP
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILAAVFYYLLNPIVDFLEKRRVPRVLTIIVLFLIIAALIAWGLIVAIPNVISGVDNFAS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNAVTTLSHLIS
HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHH
KTTSILISLIVFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLHEINSQLSNYVRGQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGLAIGGPLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILGVWGVLLAIPFYAT
HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKVIIVHVYEWYREISVLYREETATEEAKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]