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The map label for this gene is rbgA [H]

Identifier: 125624005

GI number: 125624005

Start: 1142245

End: 1143093

Strand: Direct

Name: rbgA [H]

Synonym: llmg_1175

Alternate gene names: 125624005

Gene position: 1142245-1143093 (Clockwise)

Preceding gene: 125624004

Following gene: 125624006

Centisome position: 45.16

GC content: 38.4

Gene sequence:

>849_bases
ATGGTTATACAATGGTTTCCAGGACATATGTCCAAAGCCCGTCGTCAGGTGCAGGAAAATTTAAAATATGTTGATTTTGT
GATTGAATTGGTCGATGCACGTTTGCCTATGTCTTCACGCAATCCTATGTTGGGGCAAATTATTGGGGATAAGCCAAGAA
TTATTGCTTTAAATAAGGCTGATCTGGCTGATTCAAGCAAGGTAGCTGAGTGGATTGAATATTTTGACGAGCAAGGATTT
GTAACTTTGGCTATCAATTCGAAGGAAGAATATACGGCTAAACGATTGACCGTCGCAGCTAAAAAATTGATGGCTGACAA
AGTTGCTCATGATAAGGAGCGTGGAATTGCTCATACTACTTTACGTACTATGATTATTGGAATACCAAATGCTGGTAAAT
CAACATTGATGAACCGTTTAGCAGGTAAAAAAGTTGCGGTGACAGGAAATCGCCCAGGGGTCACTAAAGGTCAGCAATGG
ATTCGAACAAATAAAGAATTAGAATTATTGGATACACCGGGGATTTTGTGGCCGAAATTTGAGGACCAACTTGTCGGATT
AAAATTGGCCTTGACTGGTGCAATCAAAGATGACTTATTGCCAATGGATGAAGTGACTATTTTTGGTTTAGATCATTTTT
TGAAAAATTATCGTTCTGTGACAATGAAACGTTATCGAATGACGGAAGAAGATTTGGAACTTGAAATTCCAGATTTGATA
ATGGAATTGACTGCTAGATTTGGATTCCGTGATGATTATGACCGTTTCTACAATATGTTTGTCAAAGATGTCCGAGATGG
TAAACTAGGACTATTTTGCTTGGATGAAGTTGGGACTGACGAACTTTAA

Upstream 100 bases:

>100_bases
ATAGAATGAAAACTCAGCTAAGTCTTGATTCTTATCTGAATGTGAAATTAAAAATATATAAAAGCTGTAGTGATGTACAG
ATAATTTGAGGAGTATTAAT

Downstream 100 bases:

>100_bases
TTAAAAAAATAGTTAATTGTTGCTGGTTCTGTCAGTAGTAATTGACATAAATTATATTATGTAAAATCACTGACAAGAAA
GTTGTCAGTAATTTTGAGAG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADLADSSKVAEWIEYFDEQGF
VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQW
IRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLDHFLKNYRSVTMKRYRMTEEDLELEIPDLI
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGTDEL

Sequences:

>Translated_282_residues
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADLADSSKVAEWIEYFDEQGF
VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQW
IRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLDHFLKNYRSVTMKRYRMTEEDLELEIPDLI
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGTDEL
>Mature_282_residues
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADLADSSKVAEWIEYFDEQGF
VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQW
IRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLDHFLKNYRSVTMKRYRMTEEDLELEIPDLI
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGTDEL

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=233, Percent_Identity=32.1888412017167, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI296317324, Length=178, Percent_Identity=28.6516853932584, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI9506611, Length=178, Percent_Identity=28.6516853932584, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193211047, Length=318, Percent_Identity=29.2452830188679, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17534827, Length=202, Percent_Identity=31.1881188118812, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI25143545, Length=291, Percent_Identity=25.4295532646048, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=291, Percent_Identity=25.4295532646048, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323744, Length=235, Percent_Identity=28.5106382978723, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324381, Length=166, Percent_Identity=29.5180722891566, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85815858, Length=308, Percent_Identity=31.1688311688312, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28572990, Length=185, Percent_Identity=32.4324324324324, Blast_Score=92, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32187; Mature: 32187

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEECC
DLADSSKVAEWIEYFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTT
CCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKF
HHHHEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCC
EDQLVGLKLALTGAIKDDLLPMDEVTIFGLDHFLKNYRSVTMKRYRMTEEDLELEIPDLI
CCHHEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEHHHHH
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGTDEL
HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEECC
DLADSSKVAEWIEYFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTT
CCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKF
HHHHEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCC
EDQLVGLKLALTGAIKDDLLPMDEVTIFGLDHFLKNYRSVTMKRYRMTEEDLELEIPDLI
CCHHEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEHHHHH
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGTDEL
HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]