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The map label for this gene is ydeF [H]

Identifier: 125623982

GI number: 125623982

Start: 1117267

End: 1118679

Strand: Reverse

Name: ydeF [H]

Synonym: llmg_1151

Alternate gene names: 125623982

Gene position: 1118679-1117267 (Counterclockwise)

Preceding gene: 125623988

Following gene: 125623976

Centisome position: 44.23

GC content: 33.19

Gene sequence:

>1413_bases
GTGTCAGTAAATAGCTATAAAAATAATCCACTATCTTGGCAACCAGACAAAACTTTGTTAAAAAGTCCTATTTATAAGTC
TTTGGTTGATTTACTTCAAGAAGATATTTTATCTAATCAACTTATTCAAGATACGAAATTACCTTCACAGCGTGAGCTTG
CTGACTTTTTAGATTTAAATTTTACTACTGTCGGTCAGGCTTATCAATATGCAATAAAAAAAGGCCTCTTATATACTAAC
GTTGGAAGTGGAACCTACGTCTCACCAAATGCTTATCACTCGGCTACAATTTCTACTCATAATGTTGAAAAAAATATCAT
TGATTTTGGTCTTGTAAGTTCATTTGAAGAATGTAATTCTTTAGTGGTCCCTTTTATTCAGTCAGTCACTACCAGTCCTG
ACTTAATTAAATTATTAGATTATCAGAACCCAATGGGCTCTAATTTTCAAATTGAAACTGCCTCAAAATGGCTTGAAACT
CAAGGGGTTATTCCTTATAAAAACCAAGTTGCCATTGTTTCCGGAGTTCAAAACGGACTTGCCATTACATTGTCAGCAAT
GTTTGCTCCGGGAGATCGAATCGCGGTGGACCGCTACACCTACTCTAATTTTATCGAATTAGCACATCTCTATCATTTAG
AAATCGTTCCAATTGATTTTGATGATGACGGAATGTCTCCAGCTGCTTTAAAAAGCGAATGTCTTAAGAAAAAAATAAAA
GGTATTTTTATAATGCCTTCTTGTAATAATCCGATTGGTTTTCAGATTTCTGAAGAACGCCGACATGAACTTGCAAAAAT
CATTAAAGAAATGGGCTTGATCGTAATCGAAGACGATATTCACTCTTTTATGACCACCTATTTTCAAGATAAAGTGCTTC
CCCCTTTCCAACAGCTTCTTCCCAATCAAACCATTTATTTAGCTGGTATGACAAAATATATTAGTTCAGGTTTAAGAATC
GCCTATTTGGTTTACCCACAAAATTTCAAATCAGCAATTGAAAAAGCCTTATTCAATATTAATGTGAAAACCTCAGGTTT
AGATGCTGAAATTATTACTCAAGTAATACAATCACCAACAGCAACAAAGATTCTTGAAACAAAGTTTGATAAATTAAAAG
AAGCTAATCAACTTTTTGATAATATTTTTAAAACTCTTAAACCTAAGCGACCAACTAATAATTATCCCTTTTACCGCATT
ATTCGTTTAAAAGATCAACTTATTCATGAAAAACAAGATACAATCGAAAACCATCTTCTGAAGCAAGGAGTTCGTGTTTT
TCATTCGGACCGCTTTTCCACTCAAACCCAACCTGACCCTTTCATTCGGATTTCCCTAACTTCAAATACTATTGAACGAT
TGGACAAAGGTTTAAAAATAATCAAAAAAGAAAATAATAAATACAATCAATAG

Upstream 100 bases:

>100_bases
AGCTAAAATAATCTATGGCTGATTCCCTTTAAAAGGCGGTTTCATTTACTTATTATATGTTATAATATTTAATATAGAAT
AACAGAGGGAAAAATAATAC

Downstream 100 bases:

>100_bases
TTCTTTAAAAATAATGATATCAAAAAGCCAGACTTAAATTAAGTCTGGCTTTTATTAATGTCAAAGAAAAATTTCTCCTT
TGGCAAAAAGAACAGCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MSVNSYKNNPLSWQPDKTLLKSPIYKSLVDLLQEDILSNQLIQDTKLPSQRELADFLDLNFTTVGQAYQYAIKKGLLYTN
VGSGTYVSPNAYHSATISTHNVEKNIIDFGLVSSFEECNSLVVPFIQSVTTSPDLIKLLDYQNPMGSNFQIETASKWLET
QGVIPYKNQVAIVSGVQNGLAITLSAMFAPGDRIAVDRYTYSNFIELAHLYHLEIVPIDFDDDGMSPAALKSECLKKKIK
GIFIMPSCNNPIGFQISEERRHELAKIIKEMGLIVIEDDIHSFMTTYFQDKVLPPFQQLLPNQTIYLAGMTKYISSGLRI
AYLVYPQNFKSAIEKALFNINVKTSGLDAEIITQVIQSPTATKILETKFDKLKEANQLFDNIFKTLKPKRPTNNYPFYRI
IRLKDQLIHEKQDTIENHLLKQGVRVFHSDRFSTQTQPDPFIRISLTSNTIERLDKGLKIIKKENNKYNQ

Sequences:

>Translated_470_residues
MSVNSYKNNPLSWQPDKTLLKSPIYKSLVDLLQEDILSNQLIQDTKLPSQRELADFLDLNFTTVGQAYQYAIKKGLLYTN
VGSGTYVSPNAYHSATISTHNVEKNIIDFGLVSSFEECNSLVVPFIQSVTTSPDLIKLLDYQNPMGSNFQIETASKWLET
QGVIPYKNQVAIVSGVQNGLAITLSAMFAPGDRIAVDRYTYSNFIELAHLYHLEIVPIDFDDDGMSPAALKSECLKKKIK
GIFIMPSCNNPIGFQISEERRHELAKIIKEMGLIVIEDDIHSFMTTYFQDKVLPPFQQLLPNQTIYLAGMTKYISSGLRI
AYLVYPQNFKSAIEKALFNINVKTSGLDAEIITQVIQSPTATKILETKFDKLKEANQLFDNIFKTLKPKRPTNNYPFYRI
IRLKDQLIHEKQDTIENHLLKQGVRVFHSDRFSTQTQPDPFIRISLTSNTIERLDKGLKIIKKENNKYNQ
>Mature_469_residues
SVNSYKNNPLSWQPDKTLLKSPIYKSLVDLLQEDILSNQLIQDTKLPSQRELADFLDLNFTTVGQAYQYAIKKGLLYTNV
GSGTYVSPNAYHSATISTHNVEKNIIDFGLVSSFEECNSLVVPFIQSVTTSPDLIKLLDYQNPMGSNFQIETASKWLETQ
GVIPYKNQVAIVSGVQNGLAITLSAMFAPGDRIAVDRYTYSNFIELAHLYHLEIVPIDFDDDGMSPAALKSECLKKKIKG
IFIMPSCNNPIGFQISEERRHELAKIIKEMGLIVIEDDIHSFMTTYFQDKVLPPFQQLLPNQTIYLAGMTKYISSGLRIA
YLVYPQNFKSAIEKALFNINVKTSGLDAEIITQVIQSPTATKILETKFDKLKEANQLFDNIFKTLKPKRPTNNYPFYRII
RLKDQLIHEKQDTIENHLLKQGVRVFHSDRFSTQTQPDPFIRISLTSNTIERLDKGLKIIKKENNKYNQ

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=322, Percent_Identity=22.9813664596273, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI33469970, Length=322, Percent_Identity=22.9813664596273, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI1790797, Length=385, Percent_Identity=23.6363636363636, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787710, Length=326, Percent_Identity=22.6993865030675, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53483; Mature: 53352

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNSYKNNPLSWQPDKTLLKSPIYKSLVDLLQEDILSNQLIQDTKLPSQRELADFLDLN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
FTTVGQAYQYAIKKGLLYTNVGSGTYVSPNAYHSATISTHNVEKNIIDFGLVSSFEECNS
HHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
LVVPFIQSVTTSPDLIKLLDYQNPMGSNFQIETASKWLETQGVIPYKNQVAIVSGVQNGL
HHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEECCCCCE
AITLSAMFAPGDRIAVDRYTYSNFIELAHLYHLEIVPIDFDDDGMSPAALKSECLKKKIK
EEEEEEEECCCCEEEEEHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHC
GIFIMPSCNNPIGFQISEERRHELAKIIKEMGLIVIEDDIHSFMTTYFQDKVLPPFQQLL
CEEEEECCCCCCCCEECHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCHHHHHC
PNQTIYLAGMTKYISSGLRIAYLVYPQNFKSAIEKALFNINVKTSGLDAEIITQVIQSPT
CCCEEEEEEHHHHHHCCCEEEEEEECHHHHHHHHHHHHEECEECCCCCHHHHHHHHCCCC
ATKILETKFDKLKEANQLFDNIFKTLKPKRPTNNYPFYRIIRLKDQLIHEKQDTIENHLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
KQGVRVFHSDRFSTQTQPDPFIRISLTSNTIERLDKGLKIIKKENNKYNQ
HHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVNSYKNNPLSWQPDKTLLKSPIYKSLVDLLQEDILSNQLIQDTKLPSQRELADFLDLN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
FTTVGQAYQYAIKKGLLYTNVGSGTYVSPNAYHSATISTHNVEKNIIDFGLVSSFEECNS
HHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
LVVPFIQSVTTSPDLIKLLDYQNPMGSNFQIETASKWLETQGVIPYKNQVAIVSGVQNGL
HHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEECCCCCE
AITLSAMFAPGDRIAVDRYTYSNFIELAHLYHLEIVPIDFDDDGMSPAALKSECLKKKIK
EEEEEEEECCCCEEEEEHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHC
GIFIMPSCNNPIGFQISEERRHELAKIIKEMGLIVIEDDIHSFMTTYFQDKVLPPFQQLL
CEEEEECCCCCCCCEECHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCHHHHHC
PNQTIYLAGMTKYISSGLRIAYLVYPQNFKSAIEKALFNINVKTSGLDAEIITQVIQSPT
CCCEEEEEEHHHHHHCCCEEEEEEECHHHHHHHHHHHHEECEECCCCCHHHHHHHHCCCC
ATKILETKFDKLKEANQLFDNIFKTLKPKRPTNNYPFYRIIRLKDQLIHEKQDTIENHLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
KQGVRVFHSDRFSTQTQPDPFIRISLTSNTIERLDKGLKIIKKENNKYNQ
HHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]