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The map label for this gene is ybdM [H]

Identifier: 125623885

GI number: 125623885

Start: 1016490

End: 1017032

Strand: Direct

Name: ybdM [H]

Synonym: llmg_1054

Alternate gene names: 125623885

Gene position: 1016490-1017032 (Clockwise)

Preceding gene: 125623884

Following gene: 125623886

Centisome position: 40.19

GC content: 38.86

Gene sequence:

>543_bases
ATGGGAGACATTTTTATAAGCCCAGCTTATCAAATTAAACGAGTGCCTATCGAGAAGATTAGGGCCAATACTTATAATCC
GAATCGAACAGCACCTCCTGAATTTCGTCTACTGGAACGTTCTATTTTGGAAGATGGCTATACGATGCCTATCGTTTGTT
ATTACGATAAGGAAAAGGATTTTTATGAGATTGTTGATGGATTTCATCGCTATTTGGTCATGAAAAGGTCAGAAGAAATT
GCTCAACGGGAAGGAAATTGCTTACCTGTTTCAATTATAGACCGGCCACTTGAAAATCGAATTGCCAGTACTATTCGTCA
CAATCGAGCTAGAGGAACACATTCAATTGAGTTAATGACAGAAATTGTTCAGCAGTTGGTGGAATCGGGTTTGAGTGATC
AGTGGATTATGAAACACATTGGAATGGACAAAGAAGAGTTGCTTCGCTTGAAACAAATCAGCGGTCTGGCTTCACTTTTT
CAAAATCAAGACTTTTCTCGTTCTTGGACATGGAAGGAAGATGAAGAGATAAGTGAAGAATAG

Upstream 100 bases:

>100_bases
GGATGTGCATTACAATTTTGAAAAATGACACTTCTTGTCAGTATATGGGTTTTGGTCAAACGAAAGATGAATTATAAAAG
AAACAAGAGGCAATGGAAAA

Downstream 100 bases:

>100_bases
ATTTATTAGAAAAGAAAAGGAAAACTACAATGGCACAAGAATATTTATTTGTTTACTCTAGATTAAAATTATTAATCAAA
GAAGCTCATAAGTCTTTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MGDIFISPAYQIKRVPIEKIRANTYNPNRTAPPEFRLLERSILEDGYTMPIVCYYDKEKDFYEIVDGFHRYLVMKRSEEI
AQREGNCLPVSIIDRPLENRIASTIRHNRARGTHSIELMTEIVQQLVESGLSDQWIMKHIGMDKEELLRLKQISGLASLF
QNQDFSRSWTWKEDEEISEE

Sequences:

>Translated_180_residues
MGDIFISPAYQIKRVPIEKIRANTYNPNRTAPPEFRLLERSILEDGYTMPIVCYYDKEKDFYEIVDGFHRYLVMKRSEEI
AQREGNCLPVSIIDRPLENRIASTIRHNRARGTHSIELMTEIVQQLVESGLSDQWIMKHIGMDKEELLRLKQISGLASLF
QNQDFSRSWTWKEDEEISEE
>Mature_179_residues
GDIFISPAYQIKRVPIEKIRANTYNPNRTAPPEFRLLERSILEDGYTMPIVCYYDKEKDFYEIVDGFHRYLVMKRSEEIA
QREGNCLPVSIIDRPLENRIASTIRHNRARGTHSIELMTEIVQQLVESGLSDQWIMKHIGMDKEELLRLKQISGLASLFQ
NQDFSRSWTWKEDEEISEE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=154, Percent_Identity=49.3506493506493, Blast_Score=150, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 21196; Mature: 21065

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDIFISPAYQIKRVPIEKIRANTYNPNRTAPPEFRLLERSILEDGYTMPIVCYYDKEKD
CCCEECCCCHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
FYEIVDGFHRYLVMKRSEEIAQREGNCLPVSIIDRPLENRIASTIRHNRARGTHSIELMT
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
EIVQQLVESGLSDQWIMKHIGMDKEELLRLKQISGLASLFQNQDFSRSWTWKEDEEISEE
HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
GDIFISPAYQIKRVPIEKIRANTYNPNRTAPPEFRLLERSILEDGYTMPIVCYYDKEKD
CCEECCCCHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
FYEIVDGFHRYLVMKRSEEIAQREGNCLPVSIIDRPLENRIASTIRHNRARGTHSIELMT
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
EIVQQLVESGLSDQWIMKHIGMDKEELLRLKQISGLASLFQNQDFSRSWTWKEDEEISEE
HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]