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The map label for this gene is rbsC [H]

Identifier: 125623639

GI number: 125623639

Start: 776908

End: 777855

Strand: Direct

Name: rbsC [H]

Synonym: llmg_0788

Alternate gene names: 125623639

Gene position: 776908-777855 (Clockwise)

Preceding gene: 125623638

Following gene: 125623640

Centisome position: 30.71

GC content: 38.19

Gene sequence:

>948_bases
ATGAGTGTGAAAGTTTTAGCTCAAAAATTCAGTTCTTTAACGACAATGATTGCTCTAATTGTCTTGATGATTATCATTAC
ATGTATCAATCCCAACTTTATGACGGCAAATAATTTGCTCAATTTGCTTTTACAAGTAACGGCCAATGGTTTTATTGCTT
TTGGGATGACATTTGTAATTCTGACTTCTGGCATTGACTTGTCAGTTGGTGCAATTTTAGCCCTCTCAAGTGCAGTTTCT
GCAGGTTTTATTGCTCAAGGAATGCCATTACCACTTGCCGTACTTTGTGCCTTAATTATTGGAGCCTTTCTCGGGGCGAT
TAATGGGGCACTTATTGCCTATGGGAAACTGGCACCTTTCATTGTAACTTTAGCCACTCAAATGGTCTATCGCGGAGCAA
CACTTGTTTTTACTGACGGTAATCCAATTACTAAACACATGGATGGCTATTTCTTAGCCTATATTGGACAAGGTTATTTA
CTTGGTATTCCTTTCCCTGTTATTTTAATGATTCTTGTTTTCATTATTTTATGGATTTTACTTCATAAAACAGCCTTTGG
TAAATCAGTCTATGCTCTTGGTGGAAATGAAAAAGCAGCTTATATTTCAGGTATCAAGCTCAATAAAGTAAAAATCGCAA
TTTATACTTTATCTGGAGCGATGTCGGCAATTTCTGGTTTAATCATCAGTTCTCGTTTATCATCAGCGACGCCACAAGCA
GGTTCTGGTTATGAAATGTACGCGATTGCTGCGGTTGTCCTCGGTGGAACGTCTTTAATGGGTGGGAAAGGTCGGATGTT
TGGAACTATGATTGGGGTACTAATCATTGGTGTTCTAAATAACGGCTTAAATATTATCGGTGTATCAGCCTTTTGGCAAC
AAGTTATCCAAGGATTAGTTATTCTCGTTGCGGTTCTTATCGATGTCATTCGTAGCAAACGGAAATAG

Upstream 100 bases:

>100_bases
CTGACCGAATTGCAGTCATGCACGAAGGTAAAATAGCCGGGTTTTTAAATAAAAAAGAAGCAACACAAGAAAATGTGATG
CAGCTCGCAACAGGAGGAAA

Downstream 100 bases:

>100_bases
GAGAGTTGAATATGAAATTAGTAAAAAAATTAACTTTTGCCCTTGTAGCTACTTTAGCAGTCTCAACTTTGACCGCATGT
AGTCTTTATACCGGAATTCC

Product: ribose transport system permease protein RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSVKVLAQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSSAVS
AGFIAQGMPLPLAVLCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYL
LGIPFPVILMILVFIILWILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQA
GSGYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLIDVIRSKRK

Sequences:

>Translated_315_residues
MSVKVLAQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSSAVS
AGFIAQGMPLPLAVLCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYL
LGIPFPVILMILVFIILWILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQA
GSGYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLIDVIRSKRK
>Mature_314_residues
SVKVLAQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSSAVSA
GFIAQGMPLPLAVLCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLL
GIPFPVILMILVFIILWILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAG
SGYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLIDVIRSKRK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=50.3355704697987, Blast_Score=272, Evalue=2e-74,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=41.1184210526316, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1788896, Length=312, Percent_Identity=35.5769230769231, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI145693152, Length=300, Percent_Identity=36.6666666666667, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1789992, Length=361, Percent_Identity=34.0720221606648, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787794, Length=302, Percent_Identity=33.112582781457, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1788471, Length=318, Percent_Identity=35.5345911949685, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=35.3571428571429, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI145693214, Length=276, Percent_Identity=36.5942028985507, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787793, Length=260, Percent_Identity=35.7692307692308, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33072; Mature: 32940

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKVLAQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LTSGIDLSVGAILALSSAVSAGFIAQGMPLPLAVLCALIIGAFLGAINGALIAYGKLAPF
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLLGIPFPVILMILVFIILWIL
HHHHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHH
LHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQA
HHHHHCCCEEEEECCCCCEEEEECEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCC
GSGYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLV
CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
ILVAVLIDVIRSKRK
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVKVLAQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
LTSGIDLSVGAILALSSAVSAGFIAQGMPLPLAVLCALIIGAFLGAINGALIAYGKLAPF
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLLGIPFPVILMILVFIILWIL
HHHHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHH
LHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQA
HHHHHCCCEEEEECCCCCEEEEECEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCC
GSGYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLV
CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
ILVAVLIDVIRSKRK
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]