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The map label for this gene is yshB [H]

Identifier: 125623629

GI number: 125623629

Start: 766699

End: 767259

Strand: Direct

Name: yshB [H]

Synonym: llmg_0777

Alternate gene names: 125623629

Gene position: 766699-767259 (Clockwise)

Preceding gene: 125623628

Following gene: 125623630

Centisome position: 30.31

GC content: 35.29

Gene sequence:

>561_bases
ATGATATTAAATTTGATTATTTTAGTGGCCTTGATTTGGGCTTTTATGGTTGGTTATTCACGAGGCTTGATATTACAAGT
CATTTATAGTTTGGGAACCTTACTTGCAGCCTTTATTGCCGCAAATAATTATAAAGAATTAGCTCAACAACTCAGTGTTT
GGGTTCCTTTCTCTAATGCGACGCAAAATTCACATCTCTTGCTTTTTAGTGATAAACTTCTTTTCCAATTAGATGAAGCC
TTTTATGCGAGTATAGCTTTTTTGGCAATTTTTGTAGTCGTTTATCTTATTGTTCGTCTTATTGGTCTCTTTTTGCATTT
TGCACTCAGTCCTTTAGGAAAAAACGGGAAGATTATTGCTGGAGTTTTAGGCTTTGCAGCAACTTATTTCGGGTTACAAA
TGCTACTTACGGCACTTAGTTTAGTTCCAATTGCCACTGTACAAAGTCAACTGGATGCTAGCTTTCTAGCACGTTTTATG
GTTTTACACACACCGATTTCATCAGGAATCTTGCAAAACCTGTTTATTGAAAATATTGTCCATATTAATCCACTCGGATA
A

Upstream 100 bases:

>100_bases
AGAAAGAAAATGTGACTAAAGCTTAGGTTTATTTGTGTAAATTAGTTTGGTCTGCTAGATTTCCTTGAAAAAGGTAAGAA
AAAATAAATTAGGAATTTTT

Downstream 100 bases:

>100_bases
GTTTAGGGACAAATCTACAAAAATAAATTGAAATATAACTATAATGAATAAAAAAATTCTCCAAATATTGGAATATGATA
AAGTCAAAGAGCAGTTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MILNLIILVALIWAFMVGYSRGLILQVIYSLGTLLAAFIAANNYKELAQQLSVWVPFSNATQNSHLLLFSDKLLFQLDEA
FYASIAFLAIFVVVYLIVRLIGLFLHFALSPLGKNGKIIAGVLGFAATYFGLQMLLTALSLVPIATVQSQLDASFLARFM
VLHTPISSGILQNLFIENIVHINPLG

Sequences:

>Translated_186_residues
MILNLIILVALIWAFMVGYSRGLILQVIYSLGTLLAAFIAANNYKELAQQLSVWVPFSNATQNSHLLLFSDKLLFQLDEA
FYASIAFLAIFVVVYLIVRLIGLFLHFALSPLGKNGKIIAGVLGFAATYFGLQMLLTALSLVPIATVQSQLDASFLARFM
VLHTPISSGILQNLFIENIVHINPLG
>Mature_186_residues
MILNLIILVALIWAFMVGYSRGLILQVIYSLGTLLAAFIAANNYKELAQQLSVWVPFSNATQNSHLLLFSDKLLFQLDEA
FYASIAFLAIFVVVYLIVRLIGLFLHFALSPLGKNGKIIAGVLGFAATYFGLQMLLTALSLVPIATVQSQLDASFLARFM
VLHTPISSGILQNLFIENIVHINPLG

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 20430; Mature: 20430

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNLIILVALIWAFMVGYSRGLILQVIYSLGTLLAAFIAANNYKELAQQLSVWVPFSNA
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
TQNSHLLLFSDKLLFQLDEAFYASIAFLAIFVVVYLIVRLIGLFLHFALSPLGKNGKIIA
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
GVLGFAATYFGLQMLLTALSLVPIATVQSQLDASFLARFMVLHTPISSGILQNLFIENIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
HINPLG
HCCCCC
>Mature Secondary Structure
MILNLIILVALIWAFMVGYSRGLILQVIYSLGTLLAAFIAANNYKELAQQLSVWVPFSNA
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
TQNSHLLLFSDKLLFQLDEAFYASIAFLAIFVVVYLIVRLIGLFLHFALSPLGKNGKIIA
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
GVLGFAATYFGLQMLLTALSLVPIATVQSQLDASFLARFMVLHTPISSGILQNLFIENIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
HINPLG
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]