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The map label for this gene is ypsC [H]

Identifier: 125623624

GI number: 125623624

Start: 759553

End: 760707

Strand: Direct

Name: ypsC [H]

Synonym: llmg_0771

Alternate gene names: 125623624

Gene position: 759553-760707 (Clockwise)

Preceding gene: 125623623

Following gene: 125623625

Centisome position: 30.03

GC content: 37.92

Gene sequence:

>1155_bases
ATGCAAAAGAAATTCAAATTATTGGCCACGTCTTCAAGTGGTTTGGAGAGTCTGGTTGCTCGCGAACTTCGTAATCTTGA
AATTGAAAATGTTTCAATTGATGACCGTTCACGAGTTTTCTTTGAAGGAGATTTGGCGGAAATTGCTAAAGCTAACCTGT
GGTTAAGAACTGCTGACCGTGTTAAAATCGTTGTGGGTGAATTTAAAGCTAGAACATTTGAGGAATTGTTTGAAAATGTT
TATGACTTACCTTGGGATGAGCTCATTCCATTTGGCTGTCAATTTCCTGTCAGTAAAGCAAAATCAGTGAAGTCAACTTT
ACATAATGAACCGTCAATTCAAAGTATTACAAAAAAAGCTATTGTAAAAAAATTACAAACGACATATCATCGTCCTGAAG
GAGTACCCATTCCGGAAAATGGGGCAAAATTTTCTATCGAAATTGCCTTGCACAAGGATATGGCAACTGTACTGATTGAT
ACGACTGGTGACTCGCTTTTCAAACGCGGTTACCGTTCAGAAAAAGGAGAAGCCCCTTTAAAAGAAAACATGGCTGCTTC
AATTATTTTACTAACTAATTGGTTAGCAAATCCAAGTCGTGCCTTTGTTGACCCAACTTGTGGGTCTGGAACATTCACAA
TTGAAGCTGCAATGTTGGCTTTGAACATGGCTCCAGGAATGAATCGTCCTTTTGCTTTTACGGCATGGCCTTGGTTTGAT
GAAGAAATTTTGAAACAAGAAAAAGCTTTGGCTCAAAAACAAGTTCGGAAAGATTTAGAATTAGATATTCAAGGTTTTGA
TATTGATGGAAAAATGATTGAAATCGCGAAGCACAATGCACTTGCGGCAGGCCTTTCAGATGTGATAAAATATAAGCAAA
TGCGACTTCAAGATTTTAGAACAGATAAGCTTGATGGTGTCTTAGTTTCTAACCCACCTTACGGGGTGCGTTTGGAAGAT
GAAGAGGCTGTAGCGGCTCTTTATGGTGAAATGGGTAAAACCTTTGCACCACTTGAAACTTGGAGTAAATACATTTTGAC
GAGTGATGTCGCTTTTGAAAAACACTATGGTGCAAAAGCAACTAAAAAACGCAAACTTTATAACGGAACACTAAGAACAG
ATTTGTATATGTATTTCGGAAAACGGATGAAATAA

Upstream 100 bases:

>100_bases
GGGCTTTTAGCCTCGGCTTTTTTTGATAAATAATTGGTAACGTGAAATAGAATAGTATCTCAGTCTGTAAGAATAATACA
GAGATTGGAAAGATTAAAAA

Downstream 100 bases:

>100_bases
TTTTTTACTGACAGATATTATCGTGTGAACTAGCATCTTGCTATTTTGTTTATGATACCTGTCAGTGAAATTAATTTACT
GACAGGATTTTGTCAATAAA

Product: putative N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MQKKFKLLATSSSGLESLVARELRNLEIENVSIDDRSRVFFEGDLAEIAKANLWLRTADRVKIVVGEFKARTFEELFENV
YDLPWDELIPFGCQFPVSKAKSVKSTLHNEPSIQSITKKAIVKKLQTTYHRPEGVPIPENGAKFSIEIALHKDMATVLID
TTGDSLFKRGYRSEKGEAPLKENMAASIILLTNWLANPSRAFVDPTCGSGTFTIEAAMLALNMAPGMNRPFAFTAWPWFD
EEILKQEKALAQKQVRKDLELDIQGFDIDGKMIEIAKHNALAAGLSDVIKYKQMRLQDFRTDKLDGVLVSNPPYGVRLED
EEAVAALYGEMGKTFAPLETWSKYILTSDVAFEKHYGAKATKKRKLYNGTLRTDLYMYFGKRMK

Sequences:

>Translated_384_residues
MQKKFKLLATSSSGLESLVARELRNLEIENVSIDDRSRVFFEGDLAEIAKANLWLRTADRVKIVVGEFKARTFEELFENV
YDLPWDELIPFGCQFPVSKAKSVKSTLHNEPSIQSITKKAIVKKLQTTYHRPEGVPIPENGAKFSIEIALHKDMATVLID
TTGDSLFKRGYRSEKGEAPLKENMAASIILLTNWLANPSRAFVDPTCGSGTFTIEAAMLALNMAPGMNRPFAFTAWPWFD
EEILKQEKALAQKQVRKDLELDIQGFDIDGKMIEIAKHNALAAGLSDVIKYKQMRLQDFRTDKLDGVLVSNPPYGVRLED
EEAVAALYGEMGKTFAPLETWSKYILTSDVAFEKHYGAKATKKRKLYNGTLRTDLYMYFGKRMK
>Mature_384_residues
MQKKFKLLATSSSGLESLVARELRNLEIENVSIDDRSRVFFEGDLAEIAKANLWLRTADRVKIVVGEFKARTFEELFENV
YDLPWDELIPFGCQFPVSKAKSVKSTLHNEPSIQSITKKAIVKKLQTTYHRPEGVPIPENGAKFSIEIALHKDMATVLID
TTGDSLFKRGYRSEKGEAPLKENMAASIILLTNWLANPSRAFVDPTCGSGTFTIEAAMLALNMAPGMNRPFAFTAWPWFD
EEILKQEKALAQKQVRKDLELDIQGFDIDGKMIEIAKHNALAAGLSDVIKYKQMRLQDFRTDKLDGVLVSNPPYGVRLED
EEAVAALYGEMGKTFAPLETWSKYILTSDVAFEKHYGAKATKKRKLYNGTLRTDLYMYFGKRMK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=343, Percent_Identity=32.3615160349854, Blast_Score=171, Evalue=9e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43381; Mature: 43381

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKFKLLATSSSGLESLVARELRNLEIENVSIDDRSRVFFEGDLAEIAKANLWLRTADR
CCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCEEEEECCHHHHHHHCEEEEECCC
VKIVVGEFKARTFEELFENVYDLPWDELIPFGCQFPVSKAKSVKSTLHNEPSIQSITKKA
EEEEEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
IVKKLQTTYHRPEGVPIPENGAKFSIEIALHKDMATVLIDTTGDSLFKRGYRSEKGEAPL
HHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCHHHHHHCCCCCCCCCCH
KENMAASIILLTNWLANPSRAFVDPTCGSGTFTIEAAMLALNMAPGMNRPFAFTAWPWFD
HHHHHHEEEEEEHHCCCCCCCEECCCCCCCEEEHHHHHHHHCCCCCCCCCEEEEECCCCC
EEILKQEKALAQKQVRKDLELDIQGFDIDGKMIEIAKHNALAAGLSDVIKYKQMRLQDFR
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC
TDKLDGVLVSNPPYGVRLEDEEAVAALYGEMGKTFAPLETWSKYILTSDVAFEKHYGAKA
CCCCCEEEECCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCH
TKKRKLYNGTLRTDLYMYFGKRMK
HHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQKKFKLLATSSSGLESLVARELRNLEIENVSIDDRSRVFFEGDLAEIAKANLWLRTADR
CCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCEEEEECCHHHHHHHCEEEEECCC
VKIVVGEFKARTFEELFENVYDLPWDELIPFGCQFPVSKAKSVKSTLHNEPSIQSITKKA
EEEEEEHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
IVKKLQTTYHRPEGVPIPENGAKFSIEIALHKDMATVLIDTTGDSLFKRGYRSEKGEAPL
HHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCHHHHHHCCCCCCCCCCH
KENMAASIILLTNWLANPSRAFVDPTCGSGTFTIEAAMLALNMAPGMNRPFAFTAWPWFD
HHHHHHEEEEEEHHCCCCCCCEECCCCCCCEEEHHHHHHHHCCCCCCCCCEEEEECCCCC
EEILKQEKALAQKQVRKDLELDIQGFDIDGKMIEIAKHNALAAGLSDVIKYKQMRLQDFR
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC
TDKLDGVLVSNPPYGVRLEDEEAVAALYGEMGKTFAPLETWSKYILTSDVAFEKHYGAKA
CCCCCEEEECCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCH
TKKRKLYNGTLRTDLYMYFGKRMK
HHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]