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The map label for this gene is ygdL [H]

Identifier: 125623574

GI number: 125623574

Start: 702975

End: 703628

Strand: Direct

Name: ygdL [H]

Synonym: llmg_0718

Alternate gene names: 125623574

Gene position: 702975-703628 (Clockwise)

Preceding gene: 125623572

Following gene: 125623575

Centisome position: 27.79

GC content: 29.51

Gene sequence:

>654_bases
TTGCTCAATAAAGATATAAATAGAATTTTTTTGAAAAAAATTATTGTAATTGGTTGCGGCGGTATTGGTACGGTAGTACT
TGATAATTTAGTAAGAGCTGGGTTTCGAAAATTTACTATAATTGATTTTGATAAAGTTGAAAAAAGTAATTTAAATAGAC
AATTATTCTACACAGTTGAAGATGTGGGAGGGACTAAGATTGAGATTCTCAAAAATAAGATACGGGAAATTTCCCCTAGT
TCTCAGATTACGGGAGTAAAAAGATACATAAGTGAGAAGAAAGACTTACTAGAAATTTTATCTGTTGGTGATAGTTTAGT
AATAAATTGTGCAGATAGCCCTGCAAATATAGAAAAAATTATATCCGAATGTTCTGTAGAGAAGTCACTTCCTTTTATTT
CAGCTTTTGTTGGAGTTGAGACAGGCACAGTAACTCCAATTTATGATAAAGATAACTTTCTTAAGGAAGAGGAATTTACT
GATAATTATTTACCCCTGAAAGGATCTATTCCCATGACAAATATGATTACTGGGGCTTTTCTGAGTAAAATAGTTTTTGA
TTATTTATTTAGAGACTTTCTAAATAGTGATTATTCTTTTTATTCCGAACACATTATAAACTTTGAAAAGCTTAGTGTAA
CAAATTATGAATAA

Upstream 100 bases:

>100_bases
CAAGAATCTCATTTCTCCAAATTTTGTTGGTGATGGGCAAATAATTGAAAATGATAGAACAAGAAAATACTTTGAGGATA
AAGGAATATCAGGCATTAAT

Downstream 100 bases:

>100_bases
TTTAACTTTCTTTTTAGATGATTATCCTCAAAATTTATTGAACCCAAGAGAAGTAATGGATCATAATGCAAAATTAGTTA
CTAGTTTTATGTATCAGCCG

Product: putative nucleotide binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLNKDINRIFLKKIIVIGCGGIGTVVLDNLVRAGFRKFTIIDFDKVEKSNLNRQLFYTVEDVGGTKIEILKNKIREISPS
SQITGVKRYISEKKDLLEILSVGDSLVINCADSPANIEKIISECSVEKSLPFISAFVGVETGTVTPIYDKDNFLKEEEFT
DNYLPLKGSIPMTNMITGAFLSKIVFDYLFRDFLNSDYSFYSEHIINFEKLSVTNYE

Sequences:

>Translated_217_residues
MLNKDINRIFLKKIIVIGCGGIGTVVLDNLVRAGFRKFTIIDFDKVEKSNLNRQLFYTVEDVGGTKIEILKNKIREISPS
SQITGVKRYISEKKDLLEILSVGDSLVINCADSPANIEKIISECSVEKSLPFISAFVGVETGTVTPIYDKDNFLKEEEFT
DNYLPLKGSIPMTNMITGAFLSKIVFDYLFRDFLNSDYSFYSEHIINFEKLSVTNYE
>Mature_217_residues
MLNKDINRIFLKKIIVIGCGGIGTVVLDNLVRAGFRKFTIIDFDKVEKSNLNRQLFYTVEDVGGTKIEILKNKIREISPS
SQITGVKRYISEKKDLLEILSVGDSLVINCADSPANIEKIISECSVEKSLPFISAFVGVETGTVTPIYDKDNFLKEEEFT
DNYLPLKGSIPMTNMITGAFLSKIVFDYLFRDFLNSDYSFYSEHIINFEKLSVTNYE

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=133, Percent_Identity=32.3308270676692, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082356, Length=150, Percent_Identity=26, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787048, Length=133, Percent_Identity=29.3233082706767, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203301, Length=140, Percent_Identity=34.2857142857143, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71984476, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24660640, Length=73, Percent_Identity=42.4657534246575, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 24570; Mature: 24570

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKDINRIFLKKIIVIGCGGIGTVVLDNLVRAGFRKFTIIDFDKVEKSNLNRQLFYTVE
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCEEEEEEE
DVGGTKIEILKNKIREISPSSQITGVKRYISEKKDLLEILSVGDSLVINCADSPANIEKI
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
ISECSVEKSLPFISAFVGVETGTVTPIYDKDNFLKEEEFTDNYLPLKGSIPMTNMITGAF
HHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHH
LSKIVFDYLFRDFLNSDYSFYSEHIINFEKLSVTNYE
HHHHHHHHHHHHHHCCCHHHHHHHHCCHHHEEECCCC
>Mature Secondary Structure
MLNKDINRIFLKKIIVIGCGGIGTVVLDNLVRAGFRKFTIIDFDKVEKSNLNRQLFYTVE
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCEEEEEEE
DVGGTKIEILKNKIREISPSSQITGVKRYISEKKDLLEILSVGDSLVINCADSPANIEKI
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
ISECSVEKSLPFISAFVGVETGTVTPIYDKDNFLKEEEFTDNYLPLKGSIPMTNMITGAF
HHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHH
LSKIVFDYLFRDFLNSDYSFYSEHIINFEKLSVTNYE
HHHHHHHHHHHHHHCCCHHHHHHHHCCHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]