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The map label for this gene is tnp946

Identifier: 125623573

GI number: 125623573

Start: 701028

End: 701708

Strand: Reverse

Name: tnp946

Synonym: llmg_0717

Alternate gene names: NA

Gene position: 701708-701028 (Counterclockwise)

Preceding gene: 125623578

Following gene: 125623570

Centisome position: 27.74

GC content: 38.03

Gene sequence:

>681_bases
ATGAACTATTTTAAAGGTAAACAATTCAAAAAAGACGTCATTATTGTCGCTGTTGGTTACTACCTGCGTTACAATCTAAG
CTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATTAACGTTTGTCACACAACTATTTATCGTTGGGTACAAGAAT
ACAGTAAAGTCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGATGAAACTTATATC
AAAATCAAAGGTCGTTGGCATTATCTCTATCGTGCAACTGATGCGGATGGATTGACTTTAGACATCTGGCTACGCAAGAA
ACGGGATACTCAAGCTGCTTATGCGTTCTTGAAACGACTACATAAACAGTTTGGTCAACCAAGAGTAATTGTCACGGATA
AAGCGCCCTCTATTGGTTCTGCATTTAGAAAGTTACAGAGTAACGGTTTATATACTAAGACAGAGCATCGAACCGTGAAG
TATCTCAATAACCTCATTGAGCAAGACCATCGACCAATCAAACGACGCAATAAATTTTATCGAAGTCTACGAACTGCCTC
AACCACGATTAAGGGCATGGAAACAATTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACGCTCTTCGGATTTTCGG
TATCTACTGAGATTAAGGTCTTAATGGGAATATTAGCTTAA

Upstream 100 bases:

>100_bases
GGAACCTCACCTTCTGAACGTCTTGACGGTTCTGTTGCAAAGTTTTCTGATAAATCTATTTTAGTGTAAAATGAATAAAA
ATGACAGCGAGGATATATCA

Downstream 100 bases:

>100_bases
GAACAAGAAGGATTATAAACCTTGTATTTGATTTTTAAACTTTGCAACAGAACCTTATTAAATAATTGTTGAATCCTGAT
TTGAATTAAAAGTGAACTTT

Product: transposase for insertion sequence element IS946

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNYFKGKQFKKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYI
KIKGRWHYLYRATDADGLTLDIWLRKKRDTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVK
YLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEIKVLMGILA

Sequences:

>Translated_226_residues
MNYFKGKQFKKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYI
KIKGRWHYLYRATDADGLTLDIWLRKKRDTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVK
YLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEIKVLMGILA
>Mature_226_residues
MNYFKGKQFKKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYI
KIKGRWHYLYRATDADGLTLDIWLRKKRDTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVK
YLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEIKVLMGILA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 27106; Mature: 27106

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS50994 INTEGRASE ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYFKGKQFKKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYH
CCCCCCCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LWKKKNRQSFYSWKMDETYIKIKGRWHYLYRATDADGLTLDIWLRKKRDTQAAYAFLKRL
HHHHCCCCHHHEECCCCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHH
HKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFY
HHHHCCCEEEEECCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHCCCCHHHHHHHH
RSLRTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEIKVLMGILA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
>Mature Secondary Structure
MNYFKGKQFKKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYH
CCCCCCCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LWKKKNRQSFYSWKMDETYIKIKGRWHYLYRATDADGLTLDIWLRKKRDTQAAYAFLKRL
HHHHCCCCHHHEECCCCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHH
HKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFY
HHHHCCCEEEEECCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHCCCCHHHHHHHH
RSLRTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEIKVLMGILA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2548057; 2365064 [H]