Click here to switch to the map view.

The map label for this gene is oppB

Identifier: 125623555

GI number: 125623555

Start: 685495

End: 686454

Strand: Direct

Name: oppB

Synonym: llmg_0699

Alternate gene names: 125623555

Gene position: 685495-686454 (Clockwise)

Preceding gene: 125623554

Following gene: 125623556

Centisome position: 27.1

GC content: 38.02

Gene sequence:

>960_bases
ATGTGGAAAGTAATTATTAGACGTATTTTATTGATGATCCCTCAATTATTTATCTTGAGTATTCTTGTTTTCTTCTTTGC
TAAATTGATGCCTGGTGATCCTTTTTCAGGGTTGATTGGTCCTCATACCGACCCACATGAAGTTGAAGCATTAAGACGGG
CAGCAGGTTTATATGACCCTTGGTGGGAGCAGTATCTCAGGTGGCTAGGGAATGCCATACATGGGAATTTAGGAATGTCC
TATAATCTCAAAGAGCCTGTGATGACTGTCATTGGACATAGAGCGATTAATACTTTTTGGATGTCACTTTTGTCAGTTAT
TTTAACTTACTTATTTGCTATTCCGATGTCGATAGTTGCAGCTCGAAATGAAGGAAAATGGCAAGACCAATTGTGGTTGA
CCTATAATTCAATTACTTTTGGTATTCCACCTTACGTATTCTATCTCTTGATTATCTTTATCTTTGGTTATAGTCTTAAT
TGGTTTCCGACAGGTGGGACGGTAAGTCCAGATGCGATGGGAATAATTCCTGTTTTCTTTAGTAAGATTTATCACATGAT
TCTTCCGGCTTTTAGTTTGGCGGTCTTTGGAACAGTTGGAATCTTTACTTACTTCCGCTCAGGAATTTTAGATGAACAAA
CACAAGATTATGTACGAACGGCTCGAGCCAAAGGGGTTAAGGAAAAAGTGATTTTTAGACGTCATATTTTGAGAAATGCC
TCATTACCAATTGCTTCTAATTTTGGATTTGTGATTACTGGACTCTTGGGAGGAGCAATCTTTGCTGAAACAATTTTCGG
CTATCCTGGCTTAGGACAACTTTTTATTACTTCAATATCTGGGCGAGATTATTCAATGATTACGGCTTTGATTTTATTAA
ATGGTTTTTTGGGACTTCTTGGAGCCCTCCTGTCGGATATTATCATGGCAATGGTTGACCCACGAATTCGGATTCAATAA

Upstream 100 bases:

>100_bases
GAGGATAAAAAAGCAAATTTTTATGACAAAGATGGACACGCTTTGCCCTTAAAAAAATTAAGTGAAAGTCATTGGGCTGC
TTTGCCAAAAGGAGGGGAAA

Downstream 100 bases:

>100_bases
GGAGTGAAAATGACAGAAAAAAAACACAAAAATTCTTTATCATTAGTTCACTCAATCAAAGAAGAACTAAAAAAAGATAA
ATTAGCGATGATTTCAACAA

Product: peptide transport system permease protein oppB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MWKVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEVEALRRAAGLYDPWWEQYLRWLGNAIHGNLGMS
YNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLN
WFPTGGTVSPDAMGIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVIFRRHILRNA
SLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALILLNGFLGLLGALLSDIIMAMVDPRIRIQ

Sequences:

>Translated_319_residues
MWKVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEVEALRRAAGLYDPWWEQYLRWLGNAIHGNLGMS
YNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLN
WFPTGGTVSPDAMGIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVIFRRHILRNA
SLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALILLNGFLGLLGALLSDIIMAMVDPRIRIQ
>Mature_319_residues
MWKVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEVEALRRAAGLYDPWWEQYLRWLGNAIHGNLGMS
YNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAARNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIFGYSLN
WFPTGGTVSPDAMGIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEKVIFRRHILRNA
SLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITALILLNGFLGLLGALLSDIIMAMVDPRIRIQ

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787053, Length=317, Percent_Identity=34.7003154574132, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=31.25, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787497, Length=321, Percent_Identity=32.7102803738318, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=30.9375, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787761, Length=331, Percent_Identity=28.7009063444109, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787550, Length=271, Percent_Identity=28.0442804428044, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.6243093922652, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OPPB_LACLA (P0A4N7)

Other databases:

- EMBL:   L18760
- EMBL:   AE005176
- PIR:   G86854
- RefSeq:   NP_267996.1
- ProteinModelPortal:   P0A4N7
- GeneID:   1115504
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L91252
- NMPDR:   fig|272623.1.peg.1885
- HOGENOM:   HBG724229
- OMA:   NKHIFRN
- ProtClustDB:   CLSK2750139
- BioCyc:   LLAC272623:L91252-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 35962; Mature: 35962

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x15606634)-; HASH(0x1f903ee8)-; HASH(0x1e341a00)-; HASH(0x1fe1b4fc)-; HASH(0x1e7a2a54)-; HASH(0x1fa48b50)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure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HHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471