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The map label for this gene is xerD [H]

Identifier: 125623479

GI number: 125623479

Start: 607574

End: 608509

Strand: Direct

Name: xerD [H]

Synonym: llmg_0618

Alternate gene names: 125623479

Gene position: 607574-608509 (Clockwise)

Preceding gene: 125623478

Following gene: 125623480

Centisome position: 24.02

GC content: 33.65

Gene sequence:

>936_bases
ATGCAATTCGAACAATTAGTGAAAGAATATTTACTAGAACTAAAACTAGGAAATTATTCTAAAAGGACAATGGAAACATA
TGAGCAACATATAGATAAGTTCATTGATTTCTACAGGAAAGAAATATGCAAAGAAATGGATATTTATGCAATTAACAAAA
TGCACTACAAACTATTCATTTCACAGCTCTTAGATAACTCTCTGAGGGCTACATACATCAATGCTATACTCAAATCAAAT
AAAGCCTTCTACAGTTATCTAATAAGGGAACAGGTGCTTAAAACAAGTCCTATGGACTCTATAAAGCTACTTAAAGAGAC
TAAACAAGCATTAACAACATTCAATGATGATGAAGTTAAGGCAATGTTAAACGTGTGGAACTTTAACACCTATTTGAATG
CCAGAAACAAATGTATCATCGCTGTTTTAGCTGATACAGGAATAAGGATTTCAGAACTAATCAATATTAAAGATTCAGAC
CTCACAGACCAGTATATAAGAGTTTTGGGGAAAGGTGACAAGTGGAGAGTAGTACCTATATCAAATGAATTAAACTATCT
CCTGACGAAATATAAGAGACTCAGAGACAATCATTTCAATAAGATAAGAAATAGGAATGGTAAGGTCAGAGAACTTGATT
CTGAGCTGTTTTTAGGCAAGACAGGGCGCTCTATAAAAACGATTACAAACATTGAGGTTATGATTACCCAAACAGGCTTA
CAAGCCAATGTGAGGGCTTCTGTGAGGTGCAGTCCACATCAATTTAGACATTACTGGACGTGTAAGAGCTTAGAACTGGG
ACAAGACATATTTACTATCAGTAAGCTGTTAGGACACACAAATTTATCAACAACACAAATTTATTTACAAAAGTTGACAA
ATGAACAATTGATAAGTAAGGCTGTCAAATTCAGTCCACTAAAACATTTAAGCTAA

Upstream 100 bases:

>100_bases
CTTAAAAAATAAGGTTTAGATGGTTTTAATTAGCAATATCTGAATTTAATAGATGTCCTTTCTATGTTTAATTACAAAAC
ATAGGGAGGGCATTTTTTTG

Downstream 100 bases:

>100_bases
TATATCTTACAGAACACAATCTTAAACTTAACTATAACTTAACATATAATGATGTGTTTTTCTGATATACTAAATATATT
ATGAGATTATAGTTAATATA

Product: integrase-recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MQFEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFISQLLDNSLRATYINAILKSN
KAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSD
LTDQYIRVLGKGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGL
QANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPLKHLS

Sequences:

>Translated_311_residues
MQFEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFISQLLDNSLRATYINAILKSN
KAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSD
LTDQYIRVLGKGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGL
QANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPLKHLS
>Mature_311_residues
MQFEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFISQLLDNSLRATYINAILKSN
KAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSD
LTDQYIRVLGKGDKWRVVPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGL
QANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKAVKFSPLKHLS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=271, Percent_Identity=25.830258302583, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789261, Length=233, Percent_Identity=28.3261802575107, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36471; Mature: 36471

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFI
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SQLLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVK
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
AMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRVLGKGDKWRVVPI
HHHHHHCCHHEECCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEC
SNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCCEEEEEEEEEEEEECCC
QANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISK
CCCCEEEEEECHHHHHHEEEECCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AVKFSPLKHLS
HHHCCCHHCCC
>Mature Secondary Structure
MQFEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFI
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SQLLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVK
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
AMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRVLGKGDKWRVVPI
HHHHHHCCHHEECCCCCEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEC
SNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCCEEEEEEEEEEEEECCC
QANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISK
CCCCEEEEEECHHHHHHEEEECCCHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AVKFSPLKHLS
HHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA