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The map label for this gene is yfkH [H]

Identifier: 125623441

GI number: 125623441

Start: 567981

End: 568886

Strand: Direct

Name: yfkH [H]

Synonym: llmg_0578

Alternate gene names: 125623441

Gene position: 567981-568886 (Clockwise)

Preceding gene: 125623440

Following gene: 125623443

Centisome position: 22.45

GC content: 32.78

Gene sequence:

>906_bases
ATGAGAGGAAAGATGAAAAAAGTTCTACAAAAAATTGCTGAACTAACGACAACTTTTATGACTTTTTTCAAAAGTTCAGA
AATGAGTCTGTCTTCAATTGCTGTTGCTTATTACCTTTTACTTGCAATCTTTCCTCTAGGATTGATTGTTGGAAATATTT
TACCTTTCTTACATATCAATACAACAGCTTTATTGAGTTTTTTGTCTGACCAACTCCCAAGTGATGTTTACAAAGGAATT
GAACCAGTCATTAATAATCTCTTAAATCAAAGAAATACTGGATTACTTTCACTTTCTGTTTTGGCAGGTTTTTGGACTTT
TTCAAGGGCTTTATCTGCTTTACAGATGTCGATGAATAAAGCTTATGAAGTTTTTAATCATCGTGATTTTATTGTCAGTC
GAGTAATTGGTTTAGCTGCAGGATTTGCGATTTTACTCTTTCTCTATTTCTCAATTGTCCTTTCAACTTTTGAACAATTA
ATTTTAGAGCAAGTACATCGTATTTTCGCTTTTGATGATCATTTGTATCGCACTTTGCATAATATGACCCTGCCAGCGAT
TGCTGTAGCGACTTTTTTGTCTTTGATGATGCTTTATTTTATTCTACCGAATGTCAAAATAAGAAAATTAAGATATACGA
TGCCTGGAACAATTTTTTCAACCTTTGTTTTAGTTTTTCTGACAAACTGGATTGCTAAGTATGTTAGTTTTGCTTTGCAA
CGATTGGATGACTTGAAGTTAATTGGGTCATTGGTTGTTTTTGCTCTGATGATTTGGTTTATTTTCATTGCCCGAGTTCT
AATCATTGGTGCCATACTAAATGCTGTCTACCAAAAAACAAAAGTTGGTAAGATTGAAACACGTCGCGGTGAAATCGTTG
AATTCATCAAGGAAATTAGAAAATAA

Upstream 100 bases:

>100_bases
TGTCAATACGAACACCAGTTTGTTATCACTAAAGATGGTCCTGTGATTTTGACTTCTCAAGGCGAAGAACGGACTTATTA
AGAAGTAAAAGGAAAAACAG

Downstream 100 bases:

>100_bases
AAAAAATACTGACAGAAAATCTGTCAGTGTTTTTTGTTCGCCGATTCAATGCTCAACTTTGTTCGCATTGAATTGTCAGT
AGTTTTTTTAAAAATAATTT

Product: putative tRNA-processing ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRGKMKKVLQKIAELTTTFMTFFKSSEMSLSSIAVAYYLLLAIFPLGLIVGNILPFLHINTTALLSFLSDQLPSDVYKGI
EPVINNLLNQRNTGLLSLSVLAGFWTFSRALSALQMSMNKAYEVFNHRDFIVSRVIGLAAGFAILLFLYFSIVLSTFEQL
ILEQVHRIFAFDDHLYRTLHNMTLPAIAVATFLSLMMLYFILPNVKIRKLRYTMPGTIFSTFVLVFLTNWIAKYVSFALQ
RLDDLKLIGSLVVFALMIWFIFIARVLIIGAILNAVYQKTKVGKIETRRGEIVEFIKEIRK

Sequences:

>Translated_301_residues
MRGKMKKVLQKIAELTTTFMTFFKSSEMSLSSIAVAYYLLLAIFPLGLIVGNILPFLHINTTALLSFLSDQLPSDVYKGI
EPVINNLLNQRNTGLLSLSVLAGFWTFSRALSALQMSMNKAYEVFNHRDFIVSRVIGLAAGFAILLFLYFSIVLSTFEQL
ILEQVHRIFAFDDHLYRTLHNMTLPAIAVATFLSLMMLYFILPNVKIRKLRYTMPGTIFSTFVLVFLTNWIAKYVSFALQ
RLDDLKLIGSLVVFALMIWFIFIARVLIIGAILNAVYQKTKVGKIETRRGEIVEFIKEIRK
>Mature_301_residues
MRGKMKKVLQKIAELTTTFMTFFKSSEMSLSSIAVAYYLLLAIFPLGLIVGNILPFLHINTTALLSFLSDQLPSDVYKGI
EPVINNLLNQRNTGLLSLSVLAGFWTFSRALSALQMSMNKAYEVFNHRDFIVSRVIGLAAGFAILLFLYFSIVLSTFEQL
ILEQVHRIFAFDDHLYRTLHNMTLPAIAVATFLSLMMLYFILPNVKIRKLRYTMPGTIFSTFVLVFLTNWIAKYVSFALQ
RLDDLKLIGSLVVFALMIWFIFIARVLIIGAILNAVYQKTKVGKIETRRGEIVEFIKEIRK

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 34334; Mature: 34334

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGKMKKVLQKIAELTTTFMTFFKSSEMSLSSIAVAYYLLLAIFPLGLIVGNILPFLHIN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTALLSFLSDQLPSDVYKGIEPVINNLLNQRNTGLLSLSVLAGFWTFSRALSALQMSMNK
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYEVFNHRDFIVSRVIGLAAGFAILLFLYFSIVLSTFEQLILEQVHRIFAFDDHLYRTLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMTLPAIAVATFLSLMMLYFILPNVKIRKLRYTMPGTIFSTFVLVFLTNWIAKYVSFALQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLDDLKLIGSLVVFALMIWFIFIARVLIIGAILNAVYQKTKVGKIETRRGEIVEFIKEIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure
MRGKMKKVLQKIAELTTTFMTFFKSSEMSLSSIAVAYYLLLAIFPLGLIVGNILPFLHIN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTALLSFLSDQLPSDVYKGIEPVINNLLNQRNTGLLSLSVLAGFWTFSRALSALQMSMNK
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYEVFNHRDFIVSRVIGLAAGFAILLFLYFSIVLSTFEQLILEQVHRIFAFDDHLYRTLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMTLPAIAVATFLSLMMLYFILPNVKIRKLRYTMPGTIFSTFVLVFLTNWIAKYVSFALQ
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLDDLKLIGSLVVFALMIWFIFIARVLIIGAILNAVYQKTKVGKIETRRGEIVEFIKEIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]