Click here to switch to the map view.

The map label for this gene is ygiS [H]

Identifier: 125623374

GI number: 125623374

Start: 498140

End: 499789

Strand: Reverse

Name: ygiS [H]

Synonym: llmg_0507

Alternate gene names: 125623374

Gene position: 499789-498140 (Counterclockwise)

Preceding gene: 125623375

Following gene: 125623364

Centisome position: 19.76

GC content: 37.33

Gene sequence:

>1650_bases
ATGAATAAATCAAAAATTATTGCTTTCTCTGCAGTTTCTCTTTCTGCTGCTCTATTACTGACAGCCTGTGGAAACTCTAG
CAGCAAATCTGAACAGCCGACTCAAAAGGCAAATTACAGCTTTGCAAGCAATATTTTAACCCTTGACACCAGCATGGCAG
CTGATGTTAATTCCATTGATGTTCTTCTCAATGTTGATGCCGGACTTGTTCGTTGGAATCCTGATGCGCAAGTTGTCAAT
GATTTGGCAAAATCAATTGACGTTTCAAAAGATGGTAAAACTTATAATGTAACTTTGCGAGACGGGTTAAAATGGTCAAA
CGGAGCTAAGTTAACGGCCGCTGATTTTGTTTATGGCTGGCAAAGAACCGTTGACCCCAAAACTGGTTCACAATATGCTT
ATGCCTTGACACCAGTTGCTAATGCCAGCGAAATAATGGCCGGTAAAAAAACAGTTGATTCTCTTGGAATTAAAGCTGAA
TCTGATACAAAATTAGTCATAACTTTAGCAACACCTACTCCTTACTTCAATAAATTACTGACACTTCCAGCTTATTATCC
CGTCAATGAAGCTTTCGTTAAGAAAATGGGAAATAAATATGGGACAAGTTCAGACACCAGTCTCTATAACGGAGCTTTCA
AATTTGTCAAAGGAAAAAATAATTGGACTGGTTCAAATGAAACTTTCTCAATTGTAAAAAATGACCAATTCTATGACGCC
AAAAATGTTAAGCTTTCTGGTGCAACTTACCAAATCGTAAATAATCCTAACACTGCTGTTAATCTTTTCAAATCTGGAAA
ACTTGATGTTGCTAATCTTGCCACTCCTGAATTAGTTTCTGCAAACAAAAAGAACAAAGATTATAAAGCTTTGACTTCAC
CAAGAATTGATGTTTTAGAATACAATCAATCTGGTAAAGTTCCTGAACTTTCTAATTTAAAAATCCGTCAAGCTCTAAAT
TTGGCAACAAATCGCAAAAACTTGCTTGAGATTGCTGCGCCAAGCTTTTCAATTACAAATACTGTGACCCCTAAAAAGTT
AGACCAAGCACCAAATGGTCAAGATTTCGCGACTTATGCCGCTCAGCCTTATACCTACGATGCCAAAAAAGCTGCCGAAC
TTTTTAAAGAAGGTCTAAAAGAGTTAGGAAAAACCTCAATTACACTTGAACTTGAAGGCGCTAATGATAATTCATTCGCT
AAAGCGGCAGTGGACTATCTCAAAGGAAATCTTGAAAAAGACTTACCAGGTTTGACCATCAACGAAAAGCTAGTCTCATC
TGCTCAACGCCAAAAAGATGCCCAAAATAATAATTTCCAAATTTTATTAACCAGCTGGGGGGCAGATTATAATGAACCTT
CTGATTTCTTGATGAACTTTGTGTCAGGAAGTTCAATGAATCACGGCTTAGTCGATAATAAAGACTTTGATAAAGCTTAT
AATGCAGCCACTACAGCTCCAGACGTTCTGTCAGCAGATAAACGATACGCTCATTATAAAGACGCTGAGAGAGCACTTTA
TGAGTCAGCTAACGTCAACCCACTTGCTACCGAATCTGTGTCTTTATTACTGAATCCAAAACTCAAAGGAATTTCTACTT
ATAACTCAGCCATGATTTTTGATTTACGTCACGCTGAAATCACTAAATAA

Upstream 100 bases:

>100_bases
AAAATCTAAACAAGTTATTTTTATATTTTTATATTTTAGGGTAAAGTTATTTTGGGAGCGCTTCGCTCTTGGAAAATTTT
AATAAGGAAAAAACAATTTC

Downstream 100 bases:

>100_bases
TAAAAAAATTTACTGACAGATTTTTGTCAGTAAATTTTTTATTCTGTCAGTAACTTTTAAACTTCATGACGAACATGGCC
GGGCTCAAATAATTGCCCCC

Product: peptide binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 549; Mature: 549

Protein sequence:

>549_residues
MNKSKIIAFSAVSLSAALLLTACGNSSSKSEQPTQKANYSFASNILTLDTSMAADVNSIDVLLNVDAGLVRWNPDAQVVN
DLAKSIDVSKDGKTYNVTLRDGLKWSNGAKLTAADFVYGWQRTVDPKTGSQYAYALTPVANASEIMAGKKTVDSLGIKAE
SDTKLVITLATPTPYFNKLLTLPAYYPVNEAFVKKMGNKYGTSSDTSLYNGAFKFVKGKNNWTGSNETFSIVKNDQFYDA
KNVKLSGATYQIVNNPNTAVNLFKSGKLDVANLATPELVSANKKNKDYKALTSPRIDVLEYNQSGKVPELSNLKIRQALN
LATNRKNLLEIAAPSFSITNTVTPKKLDQAPNGQDFATYAAQPYTYDAKKAAELFKEGLKELGKTSITLELEGANDNSFA
KAAVDYLKGNLEKDLPGLTINEKLVSSAQRQKDAQNNNFQILLTSWGADYNEPSDFLMNFVSGSSMNHGLVDNKDFDKAY
NAATTAPDVLSADKRYAHYKDAERALYESANVNPLATESVSLLLNPKLKGISTYNSAMIFDLRHAEITK

Sequences:

>Translated_549_residues
MNKSKIIAFSAVSLSAALLLTACGNSSSKSEQPTQKANYSFASNILTLDTSMAADVNSIDVLLNVDAGLVRWNPDAQVVN
DLAKSIDVSKDGKTYNVTLRDGLKWSNGAKLTAADFVYGWQRTVDPKTGSQYAYALTPVANASEIMAGKKTVDSLGIKAE
SDTKLVITLATPTPYFNKLLTLPAYYPVNEAFVKKMGNKYGTSSDTSLYNGAFKFVKGKNNWTGSNETFSIVKNDQFYDA
KNVKLSGATYQIVNNPNTAVNLFKSGKLDVANLATPELVSANKKNKDYKALTSPRIDVLEYNQSGKVPELSNLKIRQALN
LATNRKNLLEIAAPSFSITNTVTPKKLDQAPNGQDFATYAAQPYTYDAKKAAELFKEGLKELGKTSITLELEGANDNSFA
KAAVDYLKGNLEKDLPGLTINEKLVSSAQRQKDAQNNNFQILLTSWGADYNEPSDFLMNFVSGSSMNHGLVDNKDFDKAY
NAATTAPDVLSADKRYAHYKDAERALYESANVNPLATESVSLLLNPKLKGISTYNSAMIFDLRHAEITK
>Mature_549_residues
MNKSKIIAFSAVSLSAALLLTACGNSSSKSEQPTQKANYSFASNILTLDTSMAADVNSIDVLLNVDAGLVRWNPDAQVVN
DLAKSIDVSKDGKTYNVTLRDGLKWSNGAKLTAADFVYGWQRTVDPKTGSQYAYALTPVANASEIMAGKKTVDSLGIKAE
SDTKLVITLATPTPYFNKLLTLPAYYPVNEAFVKKMGNKYGTSSDTSLYNGAFKFVKGKNNWTGSNETFSIVKNDQFYDA
KNVKLSGATYQIVNNPNTAVNLFKSGKLDVANLATPELVSANKKNKDYKALTSPRIDVLEYNQSGKVPELSNLKIRQALN
LATNRKNLLEIAAPSFSITNTVTPKKLDQAPNGQDFATYAAQPYTYDAKKAAELFKEGLKELGKTSITLELEGANDNSFA
KAAVDYLKGNLEKDLPGLTINEKLVSSAQRQKDAQNNNFQILLTSWGADYNEPSDFLMNFVSGSSMNHGLVDNKDFDKAY
NAATTAPDVLSADKRYAHYKDAERALYESANVNPLATESVSLLLNPKLKGISTYNSAMIFDLRHAEITK

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=540, Percent_Identity=30, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1787495, Length=498, Percent_Identity=28.9156626506024, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI87081878, Length=536, Percent_Identity=27.9850746268657, Blast_Score=159, Evalue=6e-40,
Organism=Escherichia coli, GI1789887, Length=490, Percent_Identity=24.4897959183673, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787052, Length=492, Percent_Identity=24.1869918699187, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59824; Mature: 59824

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSKIIAFSAVSLSAALLLTACGNSSSKSEQPTQKANYSFASNILTLDTSMAADVNSID
CCCCEEEEEEHHHHHHEEHEEECCCCCCCCCCCHHHCCCHHHCCEEEEECHHHCCCCCEE
VLLNVDAGLVRWNPDAQVVNDLAKSIDVSKDGKTYNVTLRDGLKWSNGAKLTAADFVYGW
EEEECCCCEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHCCC
QRTVDPKTGSQYAYALTPVANASEIMAGKKTVDSLGIKAESDTKLVITLATPTPYFNKLL
CEECCCCCCCCEEEEECCCCCHHHHHHCHHHHHHHCCEECCCCEEEEEEECCCHHHHHHE
TLPAYYPVNEAFVKKMGNKYGTSSDTSLYNGAFKFVKGKNNWTGSNETFSIVKNDQFYDA
ECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEECC
KNVKLSGATYQIVNNPNTAVNLFKSGKLDVANLATPELVSANKKNKDYKALTSPRIDVLE
CCEEECCCEEEEECCCCCEEEEEECCCEEECCCCCCHHHCCCCCCCCCHHHCCCCEEEEE
YNQSGKVPELSNLKIRQALNLATNRKNLLEIAAPSFSITNTVTPKKLDQAPNGQDFATYA
ECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECCCCCHHHHCCCCCCCCCCCCC
AQPYTYDAKKAAELFKEGLKELGKTSITLELEGANDNSFAKAAVDYLKGNLEKDLPGLTI
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHCCCCCEE
NEKLVSSAQRQKDAQNNNFQILLTSWGADYNEPSDFLMNFVSGSSMNHGLVDNKDFDKAY
CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHH
NAATTAPDVLSADKRYAHYKDAERALYESANVNPLATESVSLLLNPKLKGISTYNSAMIF
CCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEE
DLRHAEITK
EECCCCCCC
>Mature Secondary Structure
MNKSKIIAFSAVSLSAALLLTACGNSSSKSEQPTQKANYSFASNILTLDTSMAADVNSID
CCCCEEEEEEHHHHHHEEHEEECCCCCCCCCCCHHHCCCHHHCCEEEEECHHHCCCCCEE
VLLNVDAGLVRWNPDAQVVNDLAKSIDVSKDGKTYNVTLRDGLKWSNGAKLTAADFVYGW
EEEECCCCEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHCCC
QRTVDPKTGSQYAYALTPVANASEIMAGKKTVDSLGIKAESDTKLVITLATPTPYFNKLL
CEECCCCCCCCEEEEECCCCCHHHHHHCHHHHHHHCCEECCCCEEEEEEECCCHHHHHHE
TLPAYYPVNEAFVKKMGNKYGTSSDTSLYNGAFKFVKGKNNWTGSNETFSIVKNDQFYDA
ECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEECC
KNVKLSGATYQIVNNPNTAVNLFKSGKLDVANLATPELVSANKKNKDYKALTSPRIDVLE
CCEEECCCEEEEECCCCCEEEEEECCCEEECCCCCCHHHCCCCCCCCCHHHCCCCEEEEE
YNQSGKVPELSNLKIRQALNLATNRKNLLEIAAPSFSITNTVTPKKLDQAPNGQDFATYA
ECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEECCCCCHHHHCCCCCCCCCCCCC
AQPYTYDAKKAAELFKEGLKELGKTSITLELEGANDNSFAKAAVDYLKGNLEKDLPGLTI
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHCCCCCEE
NEKLVSSAQRQKDAQNNNFQILLTSWGADYNEPSDFLMNFVSGSSMNHGLVDNKDFDKAY
CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHH
NAATTAPDVLSADKRYAHYKDAERALYESANVNPLATESVSLLLNPKLKGISTYNSAMIF
CCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEE
DLRHAEITK
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]