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The map label for this gene is araQ [H]

Identifier: 125623357

GI number: 125623357

Start: 484822

End: 485673

Strand: Direct

Name: araQ [H]

Synonym: llmg_0490

Alternate gene names: 125623357

Gene position: 484822-485673 (Clockwise)

Preceding gene: 125623356

Following gene: 125623359

Centisome position: 19.17

GC content: 36.85

Gene sequence:

>852_bases
ATGGTTTTGAAAAGAACTAAAAAACAAAGTCTGCTTCGGACGCTGCTTTATATTATTTTGATTGCTTATGCTTTTATTAC
ATTTTACCCTTTTATGTGGGCTTTAGCCGCATCTTTTAAACCATTATCTGAGATAACGAGTGGAAGTTTATCACTATTTT
CAAAGCATTTTACGATAGAGCAATACCTCTATCTCTTTAGCCCAGCTTCTGGTTCAATGTTTACACAATGGTTGATTAAT
TCAGTGATTGTTTCAGTCATTGGAACGGTAATCAATATTTTTCTGAATACAATGGCCGGATACAGCCTTGCTAGATTGAC
ATTTCCAGGGCGAAAGCAATTTTATTATGGAATTTTAGCCATGATGATGGTGCCCGCGCAAGTCCTCTTGATTCCCAACT
ATTTGATCATTAAAAATTTAGGAATGTTAGATACTTTTTGGGCGCTGATTTTACCAGCCGCGATTAATATTGGAAATATC
TTTATGATGAGACAATTTTTCCTAAGTTTTCCCAAAGATGTTGAAGAAGCAGCCAGAATTGATGGATTATCCCGCGTTGG
AACTTTTTTCCGTATTGTCATGCCCCTTGCTAAACCATCAATTGCAACGCAAGCAGTCTTTGTATTTATGGGATTTTGGA
ATAATTTTTTATCACCCATGCTCTATCTACATACTCCGAGCAAATTTACTCTGACTGTCGGCTTGCAAATGCTCCAATCA
GCTGACCAAGGGGGACAGATGTGGAATCGTGTCATGGCAGCCTCAATCCTTACCATTATTCCTATTATCATTTTGTATAT
TATATTTAATCGTTATTTCTTACAAGGCGTTCGAATGGACGGAGAAAAATAA

Upstream 100 bases:

>100_bases
GGTCAAAATAATCAAATGGGCTACGCAGCAGTCATCGCAATCATTTTGGTAATCATCATCTTTATTGTCGCCAGGATTGC
TGAGAAATTAAACGGAGGAA

Downstream 100 bases:

>100_bases
AAAAACCGCTTAGCAAACGGTTTTTTATTTTATCCCACATAAAGATAAACAGAGAAGAACATGAGGATTGCAGCTAGTAA
AACAAAGAGGTGCCAAACCA

Product: sugar transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MVLKRTKKQSLLRTLLYIILIAYAFITFYPFMWALAASFKPLSEITSGSLSLFSKHFTIEQYLYLFSPASGSMFTQWLIN
SVIVSVIGTVINIFLNTMAGYSLARLTFPGRKQFYYGILAMMMVPAQVLLIPNYLIIKNLGMLDTFWALILPAAINIGNI
FMMRQFFLSFPKDVEEAARIDGLSRVGTFFRIVMPLAKPSIATQAVFVFMGFWNNFLSPMLYLHTPSKFTLTVGLQMLQS
ADQGGQMWNRVMAASILTIIPIIILYIIFNRYFLQGVRMDGEK

Sequences:

>Translated_283_residues
MVLKRTKKQSLLRTLLYIILIAYAFITFYPFMWALAASFKPLSEITSGSLSLFSKHFTIEQYLYLFSPASGSMFTQWLIN
SVIVSVIGTVINIFLNTMAGYSLARLTFPGRKQFYYGILAMMMVPAQVLLIPNYLIIKNLGMLDTFWALILPAAINIGNI
FMMRQFFLSFPKDVEEAARIDGLSRVGTFFRIVMPLAKPSIATQAVFVFMGFWNNFLSPMLYLHTPSKFTLTVGLQMLQS
ADQGGQMWNRVMAASILTIIPIIILYIIFNRYFLQGVRMDGEK
>Mature_283_residues
MVLKRTKKQSLLRTLLYIILIAYAFITFYPFMWALAASFKPLSEITSGSLSLFSKHFTIEQYLYLFSPASGSMFTQWLIN
SVIVSVIGTVINIFLNTMAGYSLARLTFPGRKQFYYGILAMMMVPAQVLLIPNYLIIKNLGMLDTFWALILPAAINIGNI
FMMRQFFLSFPKDVEEAARIDGLSRVGTFFRIVMPLAKPSIATQAVFVFMGFWNNFLSPMLYLHTPSKFTLTVGLQMLQS
ADQGGQMWNRVMAASILTIIPIIILYIIFNRYFLQGVRMDGEK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=285, Percent_Identity=35.4385964912281, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1789860, Length=210, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790464, Length=234, Percent_Identity=26.9230769230769, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32216; Mature: 32216

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLKRTKKQSLLRTLLYIILIAYAFITFYPFMWALAASFKPLSEITSGSLSLFSKHFTIE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
QYLYLFSPASGSMFTQWLINSVIVSVIGTVINIFLNTMAGYSLARLTFPGRKQFYYGILA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHH
MMMVPAQVLLIPNYLIIKNLGMLDTFWALILPAAINIGNIFMMRQFFLSFPKDVEEAARI
HHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
DGLSRVGTFFRIVMPLAKPSIATQAVFVFMGFWNNFLSPMLYLHTPSKFTLTVGLQMLQS
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHC
ADQGGQMWNRVMAASILTIIPIIILYIIFNRYFLQGVRMDGEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVLKRTKKQSLLRTLLYIILIAYAFITFYPFMWALAASFKPLSEITSGSLSLFSKHFTIE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
QYLYLFSPASGSMFTQWLINSVIVSVIGTVINIFLNTMAGYSLARLTFPGRKQFYYGILA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCHHHHHHHHHH
MMMVPAQVLLIPNYLIIKNLGMLDTFWALILPAAINIGNIFMMRQFFLSFPKDVEEAARI
HHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
DGLSRVGTFFRIVMPLAKPSIATQAVFVFMGFWNNFLSPMLYLHTPSKFTLTVGLQMLQS
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHC
ADQGGQMWNRVMAASILTIIPIIILYIIFNRYFLQGVRMDGEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]