Click here to switch to the map view.

The map label for this gene is fni [H]

Identifier: 125623295

GI number: 125623295

Start: 418923

End: 419972

Strand: Direct

Name: fni [H]

Synonym: llmg_0428

Alternate gene names: 125623295

Gene position: 418923-419972 (Clockwise)

Preceding gene: 125623294

Following gene: 125623296

Centisome position: 16.56

GC content: 37.81

Gene sequence:

>1050_bases
ATGATGAAAAGTGAAAAAGAAATCCATCAACATCGTAAAGACGAACACCTATCATTAGCATACAAATATTGGAAAGAAGA
AAGAAATCAGACTTTGGGCCTGACTTTTTCTGATGTCCGAATCATTCCTAATACATTACCAGAACTTTCAACTGAAAAAG
TAGAGCTTTCGTCAAAAGTTTTTGGTCAGGATTTTGAATTTCCTTTTTATATCGAAGCGATGACTGGTGGAGGCGAGCGT
GCAGATAAAATTAATCAGACTTTGGCCGAAATTGCGAAAAATCAGCATCTAGCCATGGCAGTTGGTTCACAATCTATTGC
CCTGAAATTTCCAGAATTAGCCGCAGGCTTTAAAGAGGTTCGTAAAATTCATTCTTCTGGTTTTCTCTTTGCCAATCTTG
GTGCTGGACATTCTTTAGAGAATGCTAAGCGAGCGGTAGAGATGATTGAGGCCAATGCTTTAGAAATCCATGTCAATACG
GCCCAAGAGTTGCCAATGGATGAAGGAGACCGTGAATTTTATTGGTTAGAAAACATTAATGAAATTGCAAGTCAACTAGA
AGTACCAGTCATTGTCAAAGAAGTTGGCTTTGGCATTTCCCAAAAGACCTTTAAAGAACTTTCTAAAACAGCTGTTTCGG
GAATAAATGTTGGTGGAGCTGGCGGAACTAATTTTGCTTGGATTGAGCGTAAACGGAGCAAAAATGGTTTTGATTTGGAC
GATTTTGGTTTTTCAACTCTCGAAAGCCTGCTGGAGGCTAAAACGGCAGAGAATACCAAAAGCTTAGTTGCTACTGGGGG
AATTTCCTCTGCTCAAGATATTTTTAAATCTTTGATTTTAGGTGCCGATTTGGCAAGTTCAGCGGGTTTTATTTTGAAAA
ATCTCATGCAAACAGGTCCTGAAAAGGTAGAAGAAATTCTTGAGCAATGGAAGCAAGATTTGAATAAATTATTTGTTCTG
ACAGGTTCAAAAAACATAGCAGAATCCCACAATGTAGATCTACTTTATTCAGCGAAAATGCTCGATTTTATCCAACAAAG
AAAAAAATAA

Upstream 100 bases:

>100_bases
AAAGAAAACAAAGATAGATTTAAGCCTGTACGAGCCTGATTTTTCTTACTTTTCCTGTTTTTAAAAGACTAGGTTTTACA
CTTAATGAATTGAGAAATAA

Downstream 100 bases:

>100_bases
ATTATAAATCAAATCATTTGGCAATGATTTCAAAAACGACTATAATGAGAATAGAATTAAAAAATAATCTAACTGAATTC
CATTCTCAATCTGGTCAAAA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MMKSEKEIHQHRKDEHLSLAYKYWKEERNQTLGLTFSDVRIIPNTLPELSTEKVELSSKVFGQDFEFPFYIEAMTGGGER
ADKINQTLAEIAKNQHLAMAVGSQSIALKFPELAAGFKEVRKIHSSGFLFANLGAGHSLENAKRAVEMIEANALEIHVNT
AQELPMDEGDREFYWLENINEIASQLEVPVIVKEVGFGISQKTFKELSKTAVSGINVGGAGGTNFAWIERKRSKNGFDLD
DFGFSTLESLLEAKTAENTKSLVATGGISSAQDIFKSLILGADLASSAGFILKNLMQTGPEKVEEILEQWKQDLNKLFVL
TGSKNIAESHNVDLLYSAKMLDFIQQRKK

Sequences:

>Translated_349_residues
MMKSEKEIHQHRKDEHLSLAYKYWKEERNQTLGLTFSDVRIIPNTLPELSTEKVELSSKVFGQDFEFPFYIEAMTGGGER
ADKINQTLAEIAKNQHLAMAVGSQSIALKFPELAAGFKEVRKIHSSGFLFANLGAGHSLENAKRAVEMIEANALEIHVNT
AQELPMDEGDREFYWLENINEIASQLEVPVIVKEVGFGISQKTFKELSKTAVSGINVGGAGGTNFAWIERKRSKNGFDLD
DFGFSTLESLLEAKTAENTKSLVATGGISSAQDIFKSLILGADLASSAGFILKNLMQTGPEKVEEILEQWKQDLNKLFVL
TGSKNIAESHNVDLLYSAKMLDFIQQRKK
>Mature_349_residues
MMKSEKEIHQHRKDEHLSLAYKYWKEERNQTLGLTFSDVRIIPNTLPELSTEKVELSSKVFGQDFEFPFYIEAMTGGGER
ADKINQTLAEIAKNQHLAMAVGSQSIALKFPELAAGFKEVRKIHSSGFLFANLGAGHSLENAKRAVEMIEANALEIHVNT
AQELPMDEGDREFYWLENINEIASQLEVPVIVKEVGFGISQKTFKELSKTAVSGINVGGAGGTNFAWIERKRSKNGFDLD
DFGFSTLESLLEAKTAENTKSLVATGGISSAQDIFKSLILGADLASSAGFILKNLMQTGPEKVEEILEQWKQDLNKLFVL
TGSKNIAESHNVDLLYSAKMLDFIQQRKK

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 38809; Mature: 38809

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00583 PFKB_KINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKSEKEIHQHRKDEHLSLAYKYWKEERNQTLGLTFSDVRIIPNTLPELSTEKVELSSKV
CCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEECEEECCCEECCCCCCCCCHHHHHHHHHH
FGQDFEFPFYIEAMTGGGERADKINQTLAEIAKNQHLAMAVGSQSIALKFPELAAGFKEV
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECHHHHHHHHHH
RKIHSSGFLFANLGAGHSLENAKRAVEMIEANALEIHVNTAQELPMDEGDREFYWLENIN
HHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEHHHHH
EIASQLEVPVIVKEVGFGISQKTFKELSKTAVSGINVGGAGGTNFAWIERKRSKNGFDLD
HHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCCCCCH
DFGFSTLESLLEAKTAENTKSLVATGGISSAQDIFKSLILGADLASSAGFILKNLMQTGP
HCCHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCH
EKVEEILEQWKQDLNKLFVLTGSKNIAESHNVDLLYSAKMLDFIQQRKK
HHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MMKSEKEIHQHRKDEHLSLAYKYWKEERNQTLGLTFSDVRIIPNTLPELSTEKVELSSKV
CCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEECEEECCCEECCCCCCCCCHHHHHHHHHH
FGQDFEFPFYIEAMTGGGERADKINQTLAEIAKNQHLAMAVGSQSIALKFPELAAGFKEV
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECHHHHHHHHHH
RKIHSSGFLFANLGAGHSLENAKRAVEMIEANALEIHVNTAQELPMDEGDREFYWLENIN
HHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEHHHHH
EIASQLEVPVIVKEVGFGISQKTFKELSKTAVSGINVGGAGGTNFAWIERKRSKNGFDLD
HHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCCCCCH
DFGFSTLESLLEAKTAENTKSLVATGGISSAQDIFKSLILGADLASSAGFILKNLMQTGP
HCCHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCH
EKVEEILEQWKQDLNKLFVLTGSKNIAESHNVDLLYSAKMLDFIQQRKK
HHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]