Click here to switch to the map view.

The map label for this gene is recA [H]

Identifier: 125623243

GI number: 125623243

Start: 366455

End: 367618

Strand: Direct

Name: recA [H]

Synonym: llmg_0374

Alternate gene names: 125623243

Gene position: 366455-367618 (Clockwise)

Preceding gene: 125623242

Following gene: 125623246

Centisome position: 14.49

GC content: 39.18

Gene sequence:

>1164_bases
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGTGCTGAGCGTGATAAAGCATTGGCTGATGC
TCTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTCATGCGTCTTGGTGAAGCAGCTAACCAAAAAGTATCAGTTG
TAAGTTCAGGTTCTCTTGCGCTTGATATTGCACTTGGTGCAGGTGGTTACCCTAAAGGTCGTATCGTTGAAATCTACGGA
CCAGAATCTTCTGGTAAAACAACAGTCGCTCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGTGGAATTGCAGCCTTTAT
CGATGCTGAAAATGCTCTTGACCCAGAATATGCAAAAGCACTCGGTGTAAATATTGATGAACTTTTGCTCTCACAACCTG
ACTATGGTGAACAAGGACTTCAAATTGCTGAAAAATTGATTACTTCTGGAGCGGTTGACTTGGTCGTTATTGACTCAGTT
GCAGCCTTGGTACCAAAGGCCGAAATTGATGGCGAAATCGGAGACAGTTCAGTTGGTCTTCAAGCACGTATGATGTCACA
AGCCATGCGTAAACTTGCAGGACATATCAACAAAACAAAAACAACAGCGATTTTCATCAACCAATTGCGTGAAAAAGTTG
GAGTGATGTTTGGTTCACCAGAAACAACTCCTGGTGGTCGTGCTTTGAAATTTTACGCCTCAGTTCGTCTTGACGTACGT
GGTTCAACAAAAATTGAAGAAGGTTCTGGAGATAACAAAACTCAAATAGGTAAAATCACCAAAATCAAAGTCGTTAAAAA
TAAAGTTGCACCACCATTTAAGGTTGCGCTTGTTGATATCATGTTTGGTGAAGGAATTTCAAGTACAGGTGAGCTTTTAA
ATATTGCTGTTGAAGAAGGCATTATTAAGAAATCTGGTGCTTGGTTTGCTTATAATGATGAGAAGATTGGTCAAGGGGCA
GAAAAAGCTAAAAACTACCTCAAAGAGCATCAAGATGTTTTTGATGAAATAGACCACAAAGTTCGGGCAGCTCATGGACT
TCTTGATGATTCAGAAGTAGCAGAAACTGAAGAAGAAACTACAGCTTCAAAAACTAAAGCAAAAGCTAAAAAAGAAGAAA
AAGCAGTAGAAACAGAAGAAATCGAACTTGAACTTGAAGATTAA

Upstream 100 bases:

>100_bases
AAAGTTCATAAAAAAACGTATAGATATAATATAGGGGCTTATAAAAAATCCTGAAAAATGCTATAATTAAACCATAAATA
AAGAATAACGGAGATAAAAT

Downstream 100 bases:

>100_bases
AAAAAAGCAGCTGAATTAATCAGCTGTTTTTATTTTTCTAAAGAAGGTAAATAATCCAAAGATAAGAACCCAAATCACAG
AACCAATGGCCGGAATAATT

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A [H]

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDEKIGQGA
EKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVAETEEETTASKTKAKAKKEEKAVETEEIELELED

Sequences:

>Translated_387_residues
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDEKIGQGA
EKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVAETEEETTASKTKAKAKKEEKAVETEEIELELED
>Mature_386_residues
ATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVA
ALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVRG
STKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDEKIGQGAE
KAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVAETEEETTASKTKAKAKKEEKAVETEEIELELED

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family [H]

Homologues:

Organism=Escherichia coli, GI1789051, Length=350, Percent_Identity=59.4285714285714, Blast_Score=402, Evalue=1e-113,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587 [H]

Pfam domain/function: PF00154 RecA [H]

EC number: NA

Molecular weight: Translated: 41380; Mature: 41249

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00321 RECA_1 ; PS50162 RECA_2 ; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLA
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCCEE
LDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKA
EEEEECCCCCCCCEEEEEECCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
LGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGL
HCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHCCCCCCCCCCCH
QARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCCCCCCCCEEEEEEEEEEEEC
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEG
CCCEECCCCCCCCCCCCCEEEEEEEHHCCCCCHHHEEEEHHHCCCCCCCHHHHHHHHHHC
IIKKSGAWFAYNDEKIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVAETEEET
EEECCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TASKTKAKAKKEEKAVETEEIELELED
HHHHHHHHHHHHHHCCCCEEEEEEECC
>Mature Secondary Structure 
ATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLA
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCCEE
LDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKA
EEEEECCCCCCCCEEEEEECCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
LGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGL
HCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHCCCCCCCCCCCH
QARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCCCCCCCCEEEEEEEEEEEEC
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEG
CCCEECCCCCCCCCCCCCEEEEEEEHHCCCCCHHHEEEEHHHCCCCCCCHHHHHHHHHHC
IIKKSGAWFAYNDEKIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVAETEEET
EEECCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TASKTKAKAKKEEKAVETEEIELELED
HHHHHHHHHHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]