Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 125623234

GI number: 125623234

Start: 355023

End: 356054

Strand: Direct

Name: dppC [H]

Synonym: llmg_0365

Alternate gene names: 125623234

Gene position: 355023-356054 (Clockwise)

Preceding gene: 125623233

Following gene: 125623235

Centisome position: 14.04

GC content: 39.15

Gene sequence:

>1032_bases
ATGGAAAATTTAAATAAAGACTTCACCCTTGTTGGTTCAAAGGGTTCAGATTCAACAGAAAAAATTGCGAAACCTGCCTT
GAGTTTTTTCCAAGATGCTTGGCGTCGTTTCAAGAAAAATAAAATTGCCCTAGTAGCGATGTGGATTATTGCGATCACAT
TAGTTTTCTCAGTGATTTCAGCATTTGTTGTGCCACAATCAAAAGCAAACTATTTTAATCCAAATAAATCACAAGTTTAT
GGAAATCTTCCACCCAAACTTTCGGGTGATTTACCATTTTGGAATGGTGATTTCAAAGCTCCTGGTTCAGCTGAAAAAAC
AGATGTTTATAAAGCTCAAGGTGTTCCGGAAAAAGATAAATATGTCTTTGGAACGGATAAATATGGACGTTCATTAGCTA
AACGGACAGTTGTTGGTTTGCGTATTTCATTGATTATTGCCCTTGCTGCGGCTCTAATTGACTTAGTAATTGGGGTGACC
TACGGGATTATTTCCGGCTGGATGGGCGGAAAAGTCGATATGGTCATGCAACGGATTATTGAAATTATCCAATCTGTACC
AAACTTAGTTGTGGTAACCATGCTTGCCCTCTTATTGGGACAAGGGATTTCATCAATTATCATTGCCATTGGGCTCTTTG
CTTGGACCGGAATGGCCCGGCAAGTCAGGAATATGGTGCTCTCCTATAAAGAGCGTGACTTTGTCTTAGCTTCAAAAACT
TTAGGACAATCTACTTGGAAAATTGCAGTAAAACATTTGTTGCCAAACGTTTCAGGGGTTATTGTTGTCCAAATCATGTT
TGATATTCCAAGTATGATTATGTATGAGGCTGTTTTATCAGCGATTAATCTTGGGGTTAAACCGCCAACGTCTTCTTTGG
GGACTTTGATTAATGATGGGATTGCAAGCTTGCAATTCTATCCATTCCAATTGATTATTCCAGCAATCGTCTTGTCTGTG
CTCTCACTCACATTTATCTTCTTTGGAGATGGTTTGCGTGATGCATTTGACCCTAGAGCAAGTGAGGATTAG

Upstream 100 bases:

>100_bases
GATTGTTTATGCGGTAATCTTGATGGTGTTCATCTTGGTTACAGATATTCTGACTGCAATTGTTGATCCACGAGTTCGTC
TCTAGAAAGGGTTTGTCGAA

Downstream 100 bases:

>100_bases
AAATGGCAGAAGAAAAAGTATTAGAAGTTAAAAATTTGCATGTCAATTTCCACACCTATGCTGGAGATGTTAAAGCGATT
CGTAATGTTTCTTTTGATTT

Product: dipeptide transport system permease protein dppC

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MENLNKDFTLVGSKGSDSTEKIAKPALSFFQDAWRRFKKNKIALVAMWIIAITLVFSVISAFVVPQSKANYFNPNKSQVY
GNLPPKLSGDLPFWNGDFKAPGSAEKTDVYKAQGVPEKDKYVFGTDKYGRSLAKRTVVGLRISLIIALAAALIDLVIGVT
YGIISGWMGGKVDMVMQRIIEIIQSVPNLVVVTMLALLLGQGISSIIIAIGLFAWTGMARQVRNMVLSYKERDFVLASKT
LGQSTWKIAVKHLLPNVSGVIVVQIMFDIPSMIMYEAVLSAINLGVKPPTSSLGTLINDGIASLQFYPFQLIIPAIVLSV
LSLTFIFFGDGLRDAFDPRASED

Sequences:

>Translated_343_residues
MENLNKDFTLVGSKGSDSTEKIAKPALSFFQDAWRRFKKNKIALVAMWIIAITLVFSVISAFVVPQSKANYFNPNKSQVY
GNLPPKLSGDLPFWNGDFKAPGSAEKTDVYKAQGVPEKDKYVFGTDKYGRSLAKRTVVGLRISLIIALAAALIDLVIGVT
YGIISGWMGGKVDMVMQRIIEIIQSVPNLVVVTMLALLLGQGISSIIIAIGLFAWTGMARQVRNMVLSYKERDFVLASKT
LGQSTWKIAVKHLLPNVSGVIVVQIMFDIPSMIMYEAVLSAINLGVKPPTSSLGTLINDGIASLQFYPFQLIIPAIVLSV
LSLTFIFFGDGLRDAFDPRASED
>Mature_343_residues
MENLNKDFTLVGSKGSDSTEKIAKPALSFFQDAWRRFKKNKIALVAMWIIAITLVFSVISAFVVPQSKANYFNPNKSQVY
GNLPPKLSGDLPFWNGDFKAPGSAEKTDVYKAQGVPEKDKYVFGTDKYGRSLAKRTVVGLRISLIIALAAALIDLVIGVT
YGIISGWMGGKVDMVMQRIIEIIQSVPNLVVVTMLALLLGQGISSIIIAIGLFAWTGMARQVRNMVLSYKERDFVLASKT
LGQSTWKIAVKHLLPNVSGVIVVQIMFDIPSMIMYEAVLSAINLGVKPPTSSLGTLINDGIASLQFYPFQLIIPAIVLSV
LSLTFIFFGDGLRDAFDPRASED

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=322, Percent_Identity=38.5093167701863, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1787054, Length=310, Percent_Identity=28.7096774193548, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789889, Length=224, Percent_Identity=33.4821428571429, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1787760, Length=229, Percent_Identity=32.3144104803493, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788505, Length=330, Percent_Identity=27.2727272727273, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789964, Length=313, Percent_Identity=27.1565495207668, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787549, Length=310, Percent_Identity=23.5483870967742, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37519; Mature: 37519

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLNKDFTLVGSKGSDSTEKIAKPALSFFQDAWRRFKKNKIALVAMWIIAITLVFSVIS
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AFVVPQSKANYFNPNKSQVYGNLPPKLSGDLPFWNGDFKAPGSAEKTDVYKAQGVPEKDK
HHHCCCCCCCCCCCCHHCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
YVFGTDKYGRSLAKRTVVGLRISLIIALAAALIDLVIGVTYGIISGWMGGKVDMVMQRII
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EIIQSVPNLVVVTMLALLLGQGISSIIIAIGLFAWTGMARQVRNMVLSYKERDFVLASKT
HHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHH
LGQSTWKIAVKHLLPNVSGVIVVQIMFDIPSMIMYEAVLSAINLGVKPPTSSLGTLINDG
HCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IASLQFYPFQLIIPAIVLSVLSLTFIFFGDGLRDAFDPRASED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
>Mature Secondary Structure
MENLNKDFTLVGSKGSDSTEKIAKPALSFFQDAWRRFKKNKIALVAMWIIAITLVFSVIS
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AFVVPQSKANYFNPNKSQVYGNLPPKLSGDLPFWNGDFKAPGSAEKTDVYKAQGVPEKDK
HHHCCCCCCCCCCCCHHCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
YVFGTDKYGRSLAKRTVVGLRISLIIALAAALIDLVIGVTYGIISGWMGGKVDMVMQRII
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EIIQSVPNLVVVTMLALLLGQGISSIIIAIGLFAWTGMARQVRNMVLSYKERDFVLASKT
HHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHH
LGQSTWKIAVKHLLPNVSGVIVVQIMFDIPSMIMYEAVLSAINLGVKPPTSSLGTLINDG
HCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IASLQFYPFQLIIPAIVLSVLSLTFIFFGDGLRDAFDPRASED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]