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The map label for this gene is ydiC [H]

Identifier: 125623177

GI number: 125623177

Start: 293664

End: 294389

Strand: Direct

Name: ydiC [H]

Synonym: llmg_0306

Alternate gene names: 125623177

Gene position: 293664-294389 (Clockwise)

Preceding gene: 125623176

Following gene: 125623178

Centisome position: 11.61

GC content: 37.74

Gene sequence:

>726_bases
ATGAATATATTAGCATTTGATAGCTCATCAAAGGCTTTGTCAGTCGCATTGCTTACTGACGGATTATTGCTTGGTGAAGT
GACACTAAATTTGAAAAAAAATCATAGTACGACATTGATGACGACGATTGATTTTTTGATGGCTCAGGTTGGCATGGAAG
CAAAAGACCTTGATCGAATTGCAGTAGCTCAAGGTCCAGGCTCTTACACGGGATTGAGGCTTGCTGCAACTGTAGGAAAA
ACGCTGGCCTTTAGTTTGAATAAAGAACTTGTTGGCCTATCAAGTTTACTTGCGATTGCCAATCGTGTTCAAGATGATGA
AGCCTATGTTTTGCCAATTATTGATGCTAGACGCGGAAATGCTTATGCCGCCCTTTATAAAAATGGTCAGCAAATTATTG
CCGACCAACATTGTAATTTTAGCGAATTTTTGGCTGATTTATCAGAAAAAGTTTCAGATTTTAGCAAAGTAATTTTTACT
GGAGAATCTGAAAATTTTGTTGATGCAATTCAAAATGCTGGATTTTCAAAAGAACAAATCATCGCTGACAGCTTGGAAAA
ACTTCCGTCAGCTTATGAAATTGCAAAAATTGCCGAAAATTTAGTTCCTGAAAATGTGCACGCTTTTGTGCCAAAATACC
TCAAAAAAGTTGAGGCTGAAGAGAAATGGTTGGAAAGTCATGAAAAAGCTGAAAACACTCCTGACGACTACGTTCAAAGG
GTTTAG

Upstream 100 bases:

>100_bases
TTTGACAGGAAATTAATCAACAAGATTAGCTTTAAAACTGCCAGTCAGTCCTATCAGTGACTTATAAATCAACAACTTTC
AGAAATATTATAGGTAAAAA

Downstream 100 bases:

>100_bases
TGGAAAAAAATTTAATCCTCGTCGTTATTTAGAAATGGCCGATATTGACCTTGAACACGATCGAGAAGGTGTTCATTATC
GGTTGGCAGATAGGGTGGAT

Product: putative O-sialoglycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNILAFDSSSKALSVALLTDGLLLGEVTLNLKKNHSTTLMTTIDFLMAQVGMEAKDLDRIAVAQGPGSYTGLRLAATVGK
TLAFSLNKELVGLSSLLAIANRVQDDEAYVLPIIDARRGNAYAALYKNGQQIIADQHCNFSEFLADLSEKVSDFSKVIFT
GESENFVDAIQNAGFSKEQIIADSLEKLPSAYEIAKIAENLVPENVHAFVPKYLKKVEAEEKWLESHEKAENTPDDYVQR
V

Sequences:

>Translated_241_residues
MNILAFDSSSKALSVALLTDGLLLGEVTLNLKKNHSTTLMTTIDFLMAQVGMEAKDLDRIAVAQGPGSYTGLRLAATVGK
TLAFSLNKELVGLSSLLAIANRVQDDEAYVLPIIDARRGNAYAALYKNGQQIIADQHCNFSEFLADLSEKVSDFSKVIFT
GESENFVDAIQNAGFSKEQIIADSLEKLPSAYEIAKIAENLVPENVHAFVPKYLKKVEAEEKWLESHEKAENTPDDYVQR
V
>Mature_241_residues
MNILAFDSSSKALSVALLTDGLLLGEVTLNLKKNHSTTLMTTIDFLMAQVGMEAKDLDRIAVAQGPGSYTGLRLAATVGK
TLAFSLNKELVGLSSLLAIANRVQDDEAYVLPIIDARRGNAYAALYKNGQQIIADQHCNFSEFLADLSEKVSDFSKVIFT
GESENFVDAIQNAGFSKEQIIADSLEKLPSAYEIAKIAENLVPENVHAFVPKYLKKVEAEEKWLESHEKAENTPDDYVQR
V

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=232, Percent_Identity=25.8620689655172, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26415; Mature: 26415

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILAFDSSSKALSVALLTDGLLLGEVTLNLKKNHSTTLMTTIDFLMAQVGMEAKDLDRI
CEEEEECCCCCEEEEEEHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCCE
AVAQGPGSYTGLRLAATVGKTLAFSLNKELVGLSSLLAIANRVQDDEAYVLPIIDARRGN
EEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
AYAALYKNGQQIIADQHCNFSEFLADLSEKVSDFSKVIFTGESENFVDAIQNAGFSKEQI
EEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCHHHH
IADSLEKLPSAYEIAKIAENLVPENVHAFVPKYLKKVEAEEKWLESHEKAENTPDDYVQR
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
V
C
>Mature Secondary Structure
MNILAFDSSSKALSVALLTDGLLLGEVTLNLKKNHSTTLMTTIDFLMAQVGMEAKDLDRI
CEEEEECCCCCEEEEEEHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCCE
AVAQGPGSYTGLRLAATVGKTLAFSLNKELVGLSSLLAIANRVQDDEAYVLPIIDARRGN
EEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
AYAALYKNGQQIIADQHCNFSEFLADLSEKVSDFSKVIFTGESENFVDAIQNAGFSKEQI
EEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCHHHH
IADSLEKLPSAYEIAKIAENLVPENVHAFVPKYLKKVEAEEKWLESHEKAENTPDDYVQR
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]