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The map label for this gene is ybeB [H]

Identifier: 125623030

GI number: 125623030

Start: 144333

End: 144764

Strand: Direct

Name: ybeB [H]

Synonym: llmg_0151

Alternate gene names: 125623030

Gene position: 144333-144764 (Clockwise)

Preceding gene: 125623029

Following gene: 125623031

Centisome position: 5.71

GC content: 40.74

Gene sequence:

>432_bases
GTGTTTGCACGAATTTTAGGTCTTGATGTTGGTACAAAAACGGTGGGTGTGTCTGTCAGTGATTTACTTGGGATGACCGC
TCAGCCTGTTGAAACCATTAAGATTGATAGTGAAGCTGGTGAGCTCGGTTTTGATCGTCTAGCTGTCTTGATTAAAGAAT
ACAAACCTGAAAAGGTGGTTCTTGGTCTTCCAAAACATATGAACGGAGATGAAGGCATTCGTGCTGAAGCTTCGCGTGAT
TATGGAACAAAGTTGGCCAATAAATTTGGCTTAGAAGTAGCCTATCAAGATGAACGTCTGACTACAGCTCAGGCTGAAAA
AGTTTTAATTGACGGTGGAGTACGCCGCAAAGACCGAAAAAAATCGATTGATAAGTTAGCTGCTGTTTTGATTTTACAAA
ATTATCTGGATGCGCACGCATTAAAGTTATAA

Upstream 100 bases:

>100_bases
GTCATGATGATGCGCGTAATAAAATTCGCCGTTTTGACCGAGATGATATTGTTGAGGAATTAATCAAGAATTATTTGAAA
GATAATGGTGTAAATTTATA

Downstream 100 bases:

>100_bases
TTTTTGATTACTGACGAGCCTGTCAGTGATAATAAGTCTGCTTGTTTTGTTATAAGTAGCAAAAACTTCCTATAATTAAG
GATGAAGAAAAGGAAATAGA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MFARILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLPKHMNGDEGIRAEASRD
YGTKLANKFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSIDKLAAVLILQNYLDAHALKL

Sequences:

>Translated_143_residues
MFARILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLPKHMNGDEGIRAEASRD
YGTKLANKFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSIDKLAAVLILQNYLDAHALKL
>Mature_143_residues
MFARILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLPKHMNGDEGIRAEASRD
YGTKLANKFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKSIDKLAAVLILQNYLDAHALKL

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=137, Percent_Identity=33.5766423357664, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15652; Mature: 15652

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFARILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVV
CCCEEEECCCCCCEECCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
LGLPKHMNGDEGIRAEASRDYGTKLANKFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRK
EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHEEEECCCCCCCHHH
KSIDKLAAVLILQNYLDAHALKL
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFARILGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVV
CCCEEEECCCCCCEECCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
LGLPKHMNGDEGIRAEASRDYGTKLANKFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRK
EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHEEEECCCCCCCHHH
KSIDKLAAVLILQNYLDAHALKL
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]