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The map label for this gene is ybdJ [H]

Identifier: 125623028

GI number: 125623028

Start: 143092

End: 143772

Strand: Direct

Name: ybdJ [H]

Synonym: llmg_0149

Alternate gene names: 125623028

Gene position: 143092-143772 (Clockwise)

Preceding gene: 125623027

Following gene: 125623029

Centisome position: 5.66

GC content: 32.75

Gene sequence:

>681_bases
ATGATTGAACGTATAAAAAAATCTTTACAGACTAAATTAAAAACGCTTCTAGTTTTACTAGTAACGGTAGTGCTTTACAA
TGGTTGGGAACCTAGTTTAGGTATTTTTCCGACTGGTTTTTATGATTTTACTTTTAATCATTATGGAGCGGTGGATATTT
TAACTTTTTCTCTAATAACGATTATTGCTTACAAAAATGGAGCTTTTAGAAAGTTTTTTGATATTTTTCGTTGGAAAAAT
CTATTATTTATCTTATTTTTTATTATTGGTGGGGTTGTTTTTATTGCGTTAGCGCATAAATTATATTTTCAAATGACGCC
TGCTTTGGAGGCATTCCCAGAACATGGTGTGGATGTGGCAAACTCTCTTGCACGGACTCCGTTTTGGACACACTCTTTAG
ATTTATTTGTAATTGGGCCGATTTGTGAGGAACTTATTTTTCGTGAATATATTTATCGACTTTTCGATAAAAAATGGTTG
GCTTGCTTTGTAAGTGTCGTTGTGTTTGCATGGATACATACTGGTTTTACTTATTCCTTCTTTTTTTATTTGCCGATGAG
TTTGGTTGTTACTTTGGCTTATCATCGACGTAAAGCAATTGGGGAGAGTATTATTCTTCACAGTTCGATAAACTTGATCA
ATAATTATTTGCCTTATTTGCTAAATTTCTTGGTGCCTTGA

Upstream 100 bases:

>100_bases
GATATTTATGACCGTTAACTTAATCGCTTTTGTTAATTCTAGTGTATTTTAAGCTAAAGGATTGTTAATGTAATTTAGCA
ATCCTTTTTTGGGGACTTTT

Downstream 100 bases:

>100_bases
GTAGATAGGACTGTAATGTACATTATTTGGTGATTTTTCAAATTAGAATTCATATTTTATTTAAAAGTCTTTTCTAAAGA
CTTTTGTTTACTTTACTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MIERIKKSLQTKLKTLLVLLVTVVLYNGWEPSLGIFPTGFYDFTFNHYGAVDILTFSLITIIAYKNGAFRKFFDIFRWKN
LLFILFFIIGGVVFIALAHKLYFQMTPALEAFPEHGVDVANSLARTPFWTHSLDLFVIGPICEELIFREYIYRLFDKKWL
ACFVSVVVFAWIHTGFTYSFFFYLPMSLVVTLAYHRRKAIGESIILHSSINLINNYLPYLLNFLVP

Sequences:

>Translated_226_residues
MIERIKKSLQTKLKTLLVLLVTVVLYNGWEPSLGIFPTGFYDFTFNHYGAVDILTFSLITIIAYKNGAFRKFFDIFRWKN
LLFILFFIIGGVVFIALAHKLYFQMTPALEAFPEHGVDVANSLARTPFWTHSLDLFVIGPICEELIFREYIYRLFDKKWL
ACFVSVVVFAWIHTGFTYSFFFYLPMSLVVTLAYHRRKAIGESIILHSSINLINNYLPYLLNFLVP
>Mature_226_residues
MIERIKKSLQTKLKTLLVLLVTVVLYNGWEPSLGIFPTGFYDFTFNHYGAVDILTFSLITIIAYKNGAFRKFFDIFRWKN
LLFILFFIIGGVVFIALAHKLYFQMTPALEAFPEHGVDVANSLARTPFWTHSLDLFVIGPICEELIFREYIYRLFDKKWL
ACFVSVVVFAWIHTGFTYSFFFYLPMSLVVTLAYHRRKAIGESIILHSSINLINNYLPYLLNFLVP

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0177 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 26341; Mature: 26341

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERIKKSLQTKLKTLLVLLVTVVLYNGWEPSLGIFPTGFYDFTFNHYGAVDILTFSLIT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHH
IIAYKNGAFRKFFDIFRWKNLLFILFFIIGGVVFIALAHKLYFQMTPALEAFPEHGVDVA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHH
NSLARTPFWTHSLDLFVIGPICEELIFREYIYRLFDKKWLACFVSVVVFAWIHTGFTYSF
HHHHCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFYLPMSLVVTLAYHRRKAIGESIILHSSINLINNYLPYLLNFLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIERIKKSLQTKLKTLLVLLVTVVLYNGWEPSLGIFPTGFYDFTFNHYGAVDILTFSLIT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHH
IIAYKNGAFRKFFDIFRWKNLLFILFFIIGGVVFIALAHKLYFQMTPALEAFPEHGVDVA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHH
NSLARTPFWTHSLDLFVIGPICEELIFREYIYRLFDKKWLACFVSVVVFAWIHTGFTYSF
HHHHCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFYLPMSLVVTLAYHRRKAIGESIILHSSINLINNYLPYLLNFLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]