| Definition | Lactococcus lactis subsp. cremoris MG1363, complete genome. |
|---|---|
| Accession | NC_009004 |
| Length | 2,529,478 |
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The map label for this gene is vdlC [H]
Identifier: 125622971
GI number: 125622971
Start: 88166
End: 88999
Strand: Reverse
Name: vdlC [H]
Synonym: llmg_0092
Alternate gene names: 125622971
Gene position: 88999-88166 (Counterclockwise)
Preceding gene: 125622977
Following gene: 125622970
Centisome position: 3.52
GC content: 39.69
Gene sequence:
>834_bases ATGACACAAAAAACTGTTGCAATTACTGGTGCTTCAAACGGAATGGGCTTTGAAGCTACTAAACTTTTTGCCAAACGTGG TTGGAAAGTTTATGCAGGGGCGCGTAGAGTTGACAAAATTCCCCAAGATGGTGAAAAAATTAGAGCGATTAAACTTGACG TTACAGACTCTGACTCCAATAAAGCCTTTGTTAAACAAATTTTAGATGAAGCAGGCCATATTGATGTGCTCATCAATAAT GCTGGTTATGGAGAATATGGGCCAGCCGAAGAAATCCCAATGGATAAGATTCGTAAGCAGTTTGAAACTAACTTTTTTGG AGCTGTTGAATTAACTCAACTCATCTTACCAACGATGAGAGCCCAAAATTATGGACGCATTGTTAATATTTCATCTATTG GTGGCGATGTCTATATGCCACTTGGTGCCTACTATCATGCTACAAAAGCAGCCCTTCAACAATGGTCAGATGTTTTGGAC CTCGAAGTGGCTCAATTTGGTATTCGTTCCGTTTGTGTACAACCGGGAGGAACTCAATCAAGCTGGGGAAATATCGCACT AGAAAATTCCAAAAAGAACATGAGTGAAAATTCGGCTTATCAACCTCTTGTGAATTCTGTTGCTTCTGGACTTGACCGTT TTATGAAAAATAGTGCCAAGGCTTCTGACTTAGCCGAAGTTTTTTATAAAGCAGCAACGGAGCTCAATCCGAGTCTTCGA TATCTTCACGCCTTTGGTGATAAATTCATGGTGAATGTGGCTCGTAAACACCCCAAAATTTTCCGAAAAGCCCTACTTAT AACTATGCGCTATTTTGAAAAACATAATCATTAA
Upstream 100 bases:
>100_bases CTCCGCGGAAGTTTTTTTAGCCTTTGATTTACTAAAGTGGTATAATTATTTTTAAAATTAGAGAAACAAACAAAGGAAGA ATTGAAAGGATAGTAAAGAG
Downstream 100 bases:
>100_bases TAAAAAAACAGCTCTTGGAGCTGTTTTTTTATTATCTCTTTAATTTCCAAGCTTTTTTCTACTTTTAAAAGTTCTATCAG TACTATTTAAAAATTCTATA
Product: putative short-chain type dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MTQKTVAITGASNGMGFEATKLFAKRGWKVYAGARRVDKIPQDGEKIRAIKLDVTDSDSNKAFVKQILDEAGHIDVLINN AGYGEYGPAEEIPMDKIRKQFETNFFGAVELTQLILPTMRAQNYGRIVNISSIGGDVYMPLGAYYHATKAALQQWSDVLD LEVAQFGIRSVCVQPGGTQSSWGNIALENSKKNMSENSAYQPLVNSVASGLDRFMKNSAKASDLAEVFYKAATELNPSLR YLHAFGDKFMVNVARKHPKIFRKALLITMRYFEKHNH
Sequences:
>Translated_277_residues MTQKTVAITGASNGMGFEATKLFAKRGWKVYAGARRVDKIPQDGEKIRAIKLDVTDSDSNKAFVKQILDEAGHIDVLINN AGYGEYGPAEEIPMDKIRKQFETNFFGAVELTQLILPTMRAQNYGRIVNISSIGGDVYMPLGAYYHATKAALQQWSDVLD LEVAQFGIRSVCVQPGGTQSSWGNIALENSKKNMSENSAYQPLVNSVASGLDRFMKNSAKASDLAEVFYKAATELNPSLR YLHAFGDKFMVNVARKHPKIFRKALLITMRYFEKHNH >Mature_276_residues TQKTVAITGASNGMGFEATKLFAKRGWKVYAGARRVDKIPQDGEKIRAIKLDVTDSDSNKAFVKQILDEAGHIDVLINNA GYGEYGPAEEIPMDKIRKQFETNFFGAVELTQLILPTMRAQNYGRIVNISSIGGDVYMPLGAYYHATKAALQQWSDVLDL EVAQFGIRSVCVQPGGTQSSWGNIALENSKKNMSENSAYQPLVNSVASGLDRFMKNSAKASDLAEVFYKAATELNPSLRY LHAFGDKFMVNVARKHPKIFRKALLITMRYFEKHNH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7706318, Length=250, Percent_Identity=30.8, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=31.7535545023697, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI223718074, Length=256, Percent_Identity=27.34375, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI7657478, Length=184, Percent_Identity=34.2391304347826, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI40548397, Length=183, Percent_Identity=30.6010928961749, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI214010158, Length=183, Percent_Identity=30.6010928961749, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI214010156, Length=183, Percent_Identity=30.6010928961749, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI22758144, Length=183, Percent_Identity=30.6010928961749, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI4504503, Length=187, Percent_Identity=33.6898395721925, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI22507405, Length=234, Percent_Identity=29.9145299145299, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI44680136, Length=187, Percent_Identity=30.4812834224599, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI44680133, Length=187, Percent_Identity=30.4812834224599, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI17738292, Length=187, Percent_Identity=30.4812834224599, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI119392083, Length=184, Percent_Identity=32.6086956521739, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI19743808, Length=270, Percent_Identity=27.4074074074074, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI59889578, Length=160, Percent_Identity=31.25, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI150247226, Length=186, Percent_Identity=29.5698924731183, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI166795268, Length=202, Percent_Identity=31.1881188118812, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI210032110, Length=184, Percent_Identity=28.804347826087, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI19923817, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI142976729, Length=223, Percent_Identity=26.0089686098655, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4503817, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI50726952, Length=283, Percent_Identity=27.208480565371, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7705855, Length=184, Percent_Identity=32.0652173913043, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7705925, Length=193, Percent_Identity=25.3886010362694, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI87082100, Length=183, Percent_Identity=33.879781420765, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787820, Length=176, Percent_Identity=31.25, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787335, Length=180, Percent_Identity=31.6666666666667, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787905, Length=140, Percent_Identity=32.8571428571429, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788459, Length=178, Percent_Identity=28.0898876404494, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI2367365, Length=184, Percent_Identity=32.6086956521739, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786812, Length=179, Percent_Identity=29.0502793296089, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367175, Length=183, Percent_Identity=30.0546448087432, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17562904, Length=200, Percent_Identity=32.5, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17538486, Length=190, Percent_Identity=33.6842105263158, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=192, Percent_Identity=32.2916666666667, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560332, Length=202, Percent_Identity=31.6831683168317, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17562990, Length=186, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=9e-19, Organism=Caenorhabditis elegans, GI71997402, Length=200, Percent_Identity=33.5, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI72000259, Length=211, Percent_Identity=30.8056872037915, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17570069, Length=200, Percent_Identity=35.5, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17565030, Length=190, Percent_Identity=32.6315789473684, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=29.7979797979798, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=27.6381909547739, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI71994604, Length=185, Percent_Identity=28.6486486486486, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17563726, Length=188, Percent_Identity=30.8510638297872, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71994600, Length=180, Percent_Identity=29.4444444444444, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17559104, Length=210, Percent_Identity=29.0476190476191, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17567345, Length=212, Percent_Identity=28.3018867924528, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562906, Length=200, Percent_Identity=29, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17551412, Length=199, Percent_Identity=29.6482412060301, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562910, Length=191, Percent_Identity=31.9371727748691, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538480, Length=208, Percent_Identity=28.8461538461538, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534660, Length=184, Percent_Identity=26.6304347826087, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17558006, Length=135, Percent_Identity=31.8518518518519, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=30.1507537688442, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17557780, Length=284, Percent_Identity=26.056338028169, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17559962, Length=232, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17531453, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17560676, Length=198, Percent_Identity=25.2525252525253, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=28.4974093264249, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=34.5177664974619, Blast_Score=99, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6322067, Length=206, Percent_Identity=31.0679611650485, Blast_Score=96, Evalue=6e-21, Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21358495, Length=227, Percent_Identity=30.8370044052863, Blast_Score=104, Evalue=7e-23, Organism=Drosophila melanogaster, GI21357041, Length=181, Percent_Identity=32.5966850828729, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI23397609, Length=179, Percent_Identity=30.7262569832402, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI28571526, Length=181, Percent_Identity=32.0441988950276, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24580925, Length=183, Percent_Identity=30.6010928961749, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI116007238, Length=176, Percent_Identity=32.3863636363636, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI116007236, Length=188, Percent_Identity=31.3829787234043, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24644339, Length=211, Percent_Identity=29.3838862559242, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24651139, Length=194, Percent_Identity=28.8659793814433, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=28.6458333333333, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24643142, Length=220, Percent_Identity=29.0909090909091, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21355319, Length=205, Percent_Identity=26.3414634146341, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30823; Mature: 30691
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKTVAITGASNGMGFEATKLFAKRGWKVYAGARRVDKIPQDGEKIRAIKLDVTDSDSN CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCHHHHCCCCCCCEEEEEEEEECCCCCC KAFVKQILDEAGHIDVLINNAGYGEYGPAEEIPMDKIRKQFETNFFGAVELTQLILPTMR HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH AQNYGRIVNISSIGGDVYMPLGAYYHATKAALQQWSDVLDLEVAQFGIRSVCVQPGGTQS CCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SWGNIALENSKKNMSENSAYQPLVNSVASGLDRFMKNSAKASDLAEVFYKAATELNPSLR CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH YLHAFGDKFMVNVARKHPKIFRKALLITMRYFEKHNH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TQKTVAITGASNGMGFEATKLFAKRGWKVYAGARRVDKIPQDGEKIRAIKLDVTDSDSN CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCHHHHCCCCCCCEEEEEEEEECCCCCC KAFVKQILDEAGHIDVLINNAGYGEYGPAEEIPMDKIRKQFETNFFGAVELTQLILPTMR HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH AQNYGRIVNISSIGGDVYMPLGAYYHATKAALQQWSDVLDLEVAQFGIRSVCVQPGGTQS CCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SWGNIALENSKKNMSENSAYQPLVNSVASGLDRFMKNSAKASDLAEVFYKAATELNPSLR CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH YLHAFGDKFMVNVARKHPKIFRKALLITMRYFEKHNH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9139899; 9252185 [H]