| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486488
Identifier: 124486488
GI number: 124486488
Start: 1709643
End: 1710245
Strand: Reverse
Name: 124486488
Synonym: Mlab_1676
Alternate gene names: NA
Gene position: 1710245-1709643 (Counterclockwise)
Preceding gene: 124486489
Following gene: 124486485
Centisome position: 94.75
GC content: 53.57
Gene sequence:
>603_bases ATGACCACGATGCTCGTGATAAACGGAAGCCCGCGAAAACGCGGAAACACCGAGACGGTAATGAATGCCTTCGTGGAAGG CGCAAAGGAAGCCGGTGCCGAGGTGACGGTCATCCGTCTTGCGGATATCGATCACAAAAACTGCAAAGGGTGTAATTCCT GTCACAAAAACGGGATATGCGTTATCAAAGACGCGCTGACGCCGGTCTTCGATCAGCTCATGGAAGTGGATATTCTGGTT CTGGCGTCGCCGATCTACTCGATGTCGGTGACTGCCGAGATGAAGTCCTTCATCGACCGCGGGCAGTTTTTGTGGGCGCA GAAGTTCGTGACGAAGACGCTTGTCTTCGACGAAGAGCATCTTTCAAAGCATACGGGCGTGTTTCTCGCGACTTCGGGAC AGGATCTGCCGTACAGTTTCGATTCGGCGTTTCCGGTGGTCCGGGCGTTTTTCAATGATTCGGGTTTTACCTATACGGAG AACGTGCTGTTCCCGGGCATGGATCTGCACGGCGGGGTGAAGGGCTGGCCGGAGAGCGTGGTCGAGGCAAAGAAGCGGGG AAAAGAGATCGTAAAAAAGATGGATATGAAATTGAAGGCCTGA
Upstream 100 bases:
>100_bases TTCCGGGTCTCGACAAGATCAGTGATTTCCGGAAAAATCCCGAGATGATCGCCAAAGCAAAAGAGGCCGGGGACGCGATG GCGGCACTGATGGTGGAAGA
Downstream 100 bases:
>100_bases CCCTTCACCTTTTTTATTTAGGAGTAGCGCGGTGTGGAAGCATGAGAAAAACCAACCGCGAATCTCCGCGAATTAACGCC AATCGCATTTTCCTTACGTT
Product: hypothetical protein
Products: NA
Alternate protein names: AF-3; Af3; Isf-3 [H]
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MTTMLVINGSPRKRGNTETVMNAFVEGAKEAGAEVTVIRLADIDHKNCKGCNSCHKNGICVIKDALTPVFDQLMEVDILV LASPIYSMSVTAEMKSFIDRGQFLWAQKFVTKTLVFDEEHLSKHTGVFLATSGQDLPYSFDSAFPVVRAFFNDSGFTYTE NVLFPGMDLHGGVKGWPESVVEAKKRGKEIVKKMDMKLKA
Sequences:
>Translated_200_residues MTTMLVINGSPRKRGNTETVMNAFVEGAKEAGAEVTVIRLADIDHKNCKGCNSCHKNGICVIKDALTPVFDQLMEVDILV LASPIYSMSVTAEMKSFIDRGQFLWAQKFVTKTLVFDEEHLSKHTGVFLATSGQDLPYSFDSAFPVVRAFFNDSGFTYTE NVLFPGMDLHGGVKGWPESVVEAKKRGKEIVKKMDMKLKA >Mature_199_residues TTMLVINGSPRKRGNTETVMNAFVEGAKEAGAEVTVIRLADIDHKNCKGCNSCHKNGICVIKDALTPVFDQLMEVDILVL ASPIYSMSVTAEMKSFIDRGQFLWAQKFVTKTLVFDEEHLSKHTGVFLATSGQDLPYSFDSAFPVVRAFFNDSGFTYTEN VLFPGMDLHGGVKGWPESVVEAKKRGKEIVKKMDMKLKA
Specific function: Redox-active protein probably involved in electron transport [H]
COG id: COG0655
COG function: function code R; Multimeric flavodoxin WrbA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ssuE family. Isf subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005025 [H]
Pfam domain/function: PF03358 FMN_red [H]
EC number: NA
Molecular weight: Translated: 22148; Mature: 22017
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTMLVINGSPRKRGNTETVMNAFVEGAKEAGAEVTVIRLADIDHKNCKGCNSCHKNGIC CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHCCCCEE VIKDALTPVFDQLMEVDILVLASPIYSMSVTAEMKSFIDRGQFLWAQKFVTKTLVFDEEH EEHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LSKHTGVFLATSGQDLPYSFDSAFPVVRAFFNDSGFTYTENVLFPGMDLHGGVKGWPESV HHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCCHHHH VEAKKRGKEIVKKMDMKLKA HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TTMLVINGSPRKRGNTETVMNAFVEGAKEAGAEVTVIRLADIDHKNCKGCNSCHKNGIC CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHCCCCEE VIKDALTPVFDQLMEVDILVLASPIYSMSVTAEMKSFIDRGQFLWAQKFVTKTLVFDEEH EEHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LSKHTGVFLATSGQDLPYSFDSAFPVVRAFFNDSGFTYTENVLFPGMDLHGGVKGWPESV HHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCCHHHH VEAKKRGKEIVKKMDMKLKA HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]