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The map label for this gene is yecS [H]

Identifier: 124486253

GI number: 124486253

Start: 1465791

End: 1466477

Strand: Reverse

Name: yecS [H]

Synonym: Mlab_1437

Alternate gene names: 124486253

Gene position: 1466477-1465791 (Counterclockwise)

Preceding gene: 124486254

Following gene: 124486252

Centisome position: 81.25

GC content: 50.95

Gene sequence:

>687_bases
ATGTTTGAGTCGATTTCCGCAGTAACGAACTCCGCCGGGTATCTCCTGGGAGGTGTGGGTGTAACCCTTCTTTTAGTTGG
TTTTTCCCTCTTAATCGGATTTATCTGCGGAATCATTTTGACTCTCGGCCAAGTCTATGGTCCGCGCCCGGTCCGCTGGT
TCGTCGGTGTTTATGTCTGGTTCTTCCGCGGACTCCCCAATATCGTATTACTGTTTTTGTTTTACTTCGCGCTCTTCCCG
TTCATGTCATGGGATATGCCGGTGTTCGGCGTTGCCGTGACCGTGCTCGGACTTAGGAGTGCAGCCTACCAGTCACAGAT
CTTCCGTGGAGCTATCCAGTCTTTGTCGGAAGGTCAGATGCTTGCAGCACGTTCTCTTGGAATGACAAAATGGCAGGCAA
TCCGCTCGATCATTCTCCCCCAGTCGCTTCGTCTTTCTCTTCCCGGCTGGTCGAATGAATACCCGGTTCTTCTCACCGAC
TCAGCTGTTGCCTATGTGATCGGCGTTGCCGAGCTGCTGACCAGAACGAGTCAGGTGATTTCCCGGACCGGCGAACCCAT
GCTCCTGTATCTCACCTGCGCTGTGATATTCATATTGTTGAATTACGGAGGTATGATGATTATCCAATATATAGAAAAGA
AAGTCCGGATCCCGGGATTCGGCAATAACGAGGCTGAGTGTTTATGA

Upstream 100 bases:

>100_bases
GGCGACAAACTCCTTCGTAACGCTGAATAGTATTTCCACACCTTTTTTCAGATGGCAGGTCCAATAAAGTGAGCAACAGT
CTTTCGGGTTTTTAGATAAT

Downstream 100 bases:

>100_bases
GTGATGTCCCCATTCTCAAAGTCGAGAACCTCTGCAAATCGTATGGAGATCTCGAGGTTTTGAAATCCGTATCCTTCGAA
GTGCGCAAAGGAGAGAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MFESISAVTNSAGYLLGGVGVTLLLVGFSLLIGFICGIILTLGQVYGPRPVRWFVGVYVWFFRGLPNIVLLFLFYFALFP
FMSWDMPVFGVAVTVLGLRSAAYQSQIFRGAIQSLSEGQMLAARSLGMTKWQAIRSIILPQSLRLSLPGWSNEYPVLLTD
SAVAYVIGVAELLTRTSQVISRTGEPMLLYLTCAVIFILLNYGGMMIIQYIEKKVRIPGFGNNEAECL

Sequences:

>Translated_228_residues
MFESISAVTNSAGYLLGGVGVTLLLVGFSLLIGFICGIILTLGQVYGPRPVRWFVGVYVWFFRGLPNIVLLFLFYFALFP
FMSWDMPVFGVAVTVLGLRSAAYQSQIFRGAIQSLSEGQMLAARSLGMTKWQAIRSIILPQSLRLSLPGWSNEYPVLLTD
SAVAYVIGVAELLTRTSQVISRTGEPMLLYLTCAVIFILLNYGGMMIIQYIEKKVRIPGFGNNEAECL
>Mature_228_residues
MFESISAVTNSAGYLLGGVGVTLLLVGFSLLIGFICGIILTLGQVYGPRPVRWFVGVYVWFFRGLPNIVLLFLFYFALFP
FMSWDMPVFGVAVTVLGLRSAAYQSQIFRGAIQSLSEGQMLAARSLGMTKWQAIRSIILPQSLRLSLPGWSNEYPVLLTD
SAVAYVIGVAELLTRTSQVISRTGEPMLLYLTCAVIFILLNYGGMMIIQYIEKKVRIPGFGNNEAECL

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=197, Percent_Identity=39.0862944162437, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=30.1369863013699, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788645, Length=213, Percent_Identity=30.5164319248826, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787087, Length=226, Percent_Identity=27.8761061946903, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=28.169014084507, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=26.7605633802817, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1786874, Length=223, Percent_Identity=27.3542600896861, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787086, Length=209, Percent_Identity=29.1866028708134, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082239, Length=206, Percent_Identity=29.6116504854369, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25158; Mature: 25158

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFESISAVTNSAGYLLGGVGVTLLLVGFSLLIGFICGIILTLGQVYGPRPVRWFVGVYVW
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FFRGLPNIVLLFLFYFALFPFMSWDMPVFGVAVTVLGLRSAAYQSQIFRGAIQSLSEGQM
HHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LAARSLGMTKWQAIRSIILPQSLRLSLPGWSNEYPVLLTDSAVAYVIGVAELLTRTSQVI
HHHHHCCHHHHHHHHHHHCCHHHEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
SRTGEPMLLYLTCAVIFILLNYGGMMIIQYIEKKVRIPGFGNNEAECL
HCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MFESISAVTNSAGYLLGGVGVTLLLVGFSLLIGFICGIILTLGQVYGPRPVRWFVGVYVW
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
FFRGLPNIVLLFLFYFALFPFMSWDMPVFGVAVTVLGLRSAAYQSQIFRGAIQSLSEGQM
HHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LAARSLGMTKWQAIRSIILPQSLRLSLPGWSNEYPVLLTDSAVAYVIGVAELLTRTSQVI
HHHHHCCHHHHHHHHHHHCCHHHEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
SRTGEPMLLYLTCAVIFILLNYGGMMIIQYIEKKVRIPGFGNNEAECL
HCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]