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The map label for this gene is yvrC [H]

Identifier: 124486108

GI number: 124486108

Start: 1315219

End: 1316172

Strand: Reverse

Name: yvrC [H]

Synonym: Mlab_1288

Alternate gene names: 124486108

Gene position: 1316172-1315219 (Counterclockwise)

Preceding gene: 124486109

Following gene: 124486107

Centisome position: 72.92

GC content: 43.08

Gene sequence:

>954_bases
ATGAAAAAATTATTTCTATTTACAGTCGCCCTTCTATTATTGGCGGTTATATTTAGCGCAGGTTGTGTTGGAAGTAATAA
TCAGGATACCGGTAAAAGTGATTATACCCCGGTTACTGTGGAAAATTTTGGCAGAACCATTACGATTACCGAAAAACCGA
CCTCCGTTGCGGTCGCGGGACCAAACTGCGCAGAGGTGTTTGTAGCGTTGGGTTTGAGCGACATCGTTGTCGGCAAGTCC
TGTGATAATCACTGCCTCGGTCCTCTGCCGGAATATGCAGCTGGATACAACAGTATGCCCGAATTGACCCATGGCTATCC
AACTCTCGAAGCGGTTGTAACGAGCGGGTGTGATTTCCTGTATGCGATTGACTGGGTGTTTGAAGGTGACTTCACTGTAG
AAGCTCTTGAGCAGTATGGAATCACCGTATATGTCTGTGAAGCAACAGATTATGAGGGTGTTTGGAAGGAAATAAGGGAA
CTTGGTGAAATTTTCGAAGTTCAAGATGCTGCAGAAGCCTATATTGCTTCAGAAAAAGCAAGAATTGCTGCAGTTGAAAA
AACTGTTTCTGGTCAGGACACGCTGAAAGTATTTATTTATGATTCAGATACCGGAAGCGGTGTTTATACTGCCGGTGCGC
CAAATATTGAAACAAAGTTTATTGAAACCGCCGGTGGTGTGAATATCTTTGATGATTTGGACAAAGCATGGGTCGGCGTT
TCGTATGAAGAAATACTTGCAAGGAACCCTGATGTTATCATCATTCACGATTATGAAGAGGCAACCTATGAAGAAAATGT
TGAGGCTCTCATGCATGATCCAATTTTGTCTCAACTTGATGCAGTGAAGAATAAACGCTTTGTTCGTCTTTCTCTTGAAT
CTGCTCTGCCTGGTTCCCGAACCGCATATTCGATCGAAGTAATTGCAAAAGGGATGTATCCGGAATTATTCTAA

Upstream 100 bases:

>100_bases
ATGGTATTATTAATATTATAATTAATAATATCTAGTAAAAATATAAATCTAATTAGTAATCATATATTGTGTTGTAAAAT
ATTGGTTGGTGTGAAAAACT

Downstream 100 bases:

>100_bases
GATGCGGGTTCTATCCTAATCCTCTTTTTTTGTTTCCGTATTTTGGTGATAATTGTTATGCGGGCATCATCTCATCTCCC
GATCGATAATTCCTGCAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKKLFLFTVALLLLAVIFSAGCVGSNNQDTGKSDYTPVTVENFGRTITITEKPTSVAVAGPNCAEVFVALGLSDIVVGKS
CDNHCLGPLPEYAAGYNSMPELTHGYPTLEAVVTSGCDFLYAIDWVFEGDFTVEALEQYGITVYVCEATDYEGVWKEIRE
LGEIFEVQDAAEAYIASEKARIAAVEKTVSGQDTLKVFIYDSDTGSGVYTAGAPNIETKFIETAGGVNIFDDLDKAWVGV
SYEEILARNPDVIIIHDYEEATYEENVEALMHDPILSQLDAVKNKRFVRLSLESALPGSRTAYSIEVIAKGMYPELF

Sequences:

>Translated_317_residues
MKKLFLFTVALLLLAVIFSAGCVGSNNQDTGKSDYTPVTVENFGRTITITEKPTSVAVAGPNCAEVFVALGLSDIVVGKS
CDNHCLGPLPEYAAGYNSMPELTHGYPTLEAVVTSGCDFLYAIDWVFEGDFTVEALEQYGITVYVCEATDYEGVWKEIRE
LGEIFEVQDAAEAYIASEKARIAAVEKTVSGQDTLKVFIYDSDTGSGVYTAGAPNIETKFIETAGGVNIFDDLDKAWVGV
SYEEILARNPDVIIIHDYEEATYEENVEALMHDPILSQLDAVKNKRFVRLSLESALPGSRTAYSIEVIAKGMYPELF
>Mature_317_residues
MKKLFLFTVALLLLAVIFSAGCVGSNNQDTGKSDYTPVTVENFGRTITITEKPTSVAVAGPNCAEVFVALGLSDIVVGKS
CDNHCLGPLPEYAAGYNSMPELTHGYPTLEAVVTSGCDFLYAIDWVFEGDFTVEALEQYGITVYVCEATDYEGVWKEIRE
LGEIFEVQDAAEAYIASEKARIAAVEKTVSGQDTLKVFIYDSDTGSGVYTAGAPNIETKFIETAGGVNIFDDLDKAWVGV
SYEEILARNPDVIIIHDYEEATYEENVEALMHDPILSQLDAVKNKRFVRLSLESALPGSRTAYSIEVIAKGMYPELF

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 34592; Mature: 34592

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFLFTVALLLLAVIFSAGCVGSNNQDTGKSDYTPVTVENFGRTITITEKPTSVAVAG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHCCCEEEEECCCCEEEEEC
PNCAEVFVALGLSDIVVGKSCDNHCLGPLPEYAAGYNSMPELTHGYPTLEAVVTSGCDFL
CCHHHHHHHHCHHHEEECCCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHCCCCEE
YAIDWVFEGDFTVEALEQYGITVYVCEATDYEGVWKEIRELGEIFEVQDAAEAYIASEKA
EEEEEEEECCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RIAAVEKTVSGQDTLKVFIYDSDTGSGVYTAGAPNIETKFIETAGGVNIFDDLDKAWVGV
HEEEHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCC
SYEEILARNPDVIIIHDYEEATYEENVEALMHDPILSQLDAVKNKRFVRLSLESALPGSR
CHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
TAYSIEVIAKGMYPELF
CEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKKLFLFTVALLLLAVIFSAGCVGSNNQDTGKSDYTPVTVENFGRTITITEKPTSVAVAG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHCCCEEEEECCCCEEEEEC
PNCAEVFVALGLSDIVVGKSCDNHCLGPLPEYAAGYNSMPELTHGYPTLEAVVTSGCDFL
CCHHHHHHHHCHHHEEECCCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHCCCCEE
YAIDWVFEGDFTVEALEQYGITVYVCEATDYEGVWKEIRELGEIFEVQDAAEAYIASEKA
EEEEEEEECCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RIAAVEKTVSGQDTLKVFIYDSDTGSGVYTAGAPNIETKFIETAGGVNIFDDLDKAWVGV
HEEEHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCC
SYEEILARNPDVIIIHDYEEATYEENVEALMHDPILSQLDAVKNKRFVRLSLESALPGSR
CHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
TAYSIEVIAKGMYPELF
CEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]