| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
Click here to switch to the map view.
The map label for this gene is 124486093
Identifier: 124486093
GI number: 124486093
Start: 1300287
End: 1301450
Strand: Reverse
Name: 124486093
Synonym: Mlab_1273
Alternate gene names: NA
Gene position: 1301450-1300287 (Counterclockwise)
Preceding gene: 124486098
Following gene: 124486092
Centisome position: 72.1
GC content: 52.06
Gene sequence:
>1164_bases ATGCGTATTCTGGTAATTGATCCCCGTTTTGGCGCTGCAGGCGATATGATCCTTGGTGCCCTGCTCGGTCTTGGAGCAGA CAGAGAGTTCGTTCTCCGGTCGGTAGCTTCCGTCTCGAAACCGGAGATCACAAACGTTCTCCGTGCCGGAATCCCGGCAA CCTATATCAGGACCAATACGAAAAAAACGACCCGTAATCTTTCGGAAATACTGGAAATCATCTCTGCAGCAGATGCTTCA GAACAGGCAAAGGATATTGCAAAGAAGGTATTTACAAGAATCCAGAATGCAGAGGCGTCCGTCCACCAGACCGAACATGT TCATTTTCATGAGGTTGGTGCCGATGACGCAATTTCCGATATCCTTGGTTCCGTCTCGGCTATTTTATCATTGAACGTGG ATGCGGTACATATTCTCCCGCTGTCAACAGGCATGGGCACGGTCACCTGTTCGCATGGAATAATGCCGGTCCCGGCCCCG GCAACGGCAGAGATTCTCAAGGCATCCAATCTCGCCGTCTCTCTCGGTTCGTTCGAGGGAGAACTCTGTACGCCAACCGG TGCGGCATTGCTTGCCACGTTCCAGGAAGTTTTCGGAACGACCGTTCACTCGGGAAAACTTCTCTCGTCGGGCGCAGGAG CCGGTACGCGTGATCCATCCGACCACCCGAATGTTCTTTTTGCATACATTATGGATACCGGGGATGAAGCGGGATCGGTT GACGTGCTCGAAACGAATGTTGATGATATTTCGGGTGAAGTTCTCTCCTCGGTCCTTTCGACGATGATGAATGAAGGGGC CCGCGATGCGTCTGTTATCCCTATCGTCATGAAAAAAGGCAGACCCGGTTATCTCATTCGAGTCATCTCTCTCCCGCGGG ATGCCCCGCGTCTTGCAAAAATCCTTGCGCATGAGACCGGAAGTCTTGGCGTAAGATGCACCCCTATGATCCACCGGTTC ATTGCAGACAGAACGATTGCGAGTACAAGCGTCGTCATAAATGACCGGGTCTACTCCGTTGACGTCAAAATTGCATCCAT GGACGGCGTGGTCTATTCCCGCAAAGCCGAATTCGATGATCTTCAGCGAATCTCGGATGCATCCGGTCTTCCGGTTCGAA CGGTAAAACGCATCGTCGAGGAAGATGTATGGAAGACGCCGTAA
Upstream 100 bases:
>100_bases CTTCCAATGACAAGCTCTTTCATCAAATATGAAAACAGGACCTCGTCGTACCATAAGGCGATATTTATTGTGACATGCAG GCGTAATAGATATACATAAT
Downstream 100 bases:
>100_bases AAAAAATATCAACCGGAGCCTCTGGACTTGACACCCTTCTCGGCGGCGGCATTGAGCCGCGTATGATCACCCAGTTTTTT GGAGAGGCCGGTTCGGGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MRILVIDPRFGAAGDMILGALLGLGADREFVLRSVASVSKPEITNVLRAGIPATYIRTNTKKTTRNLSEILEIISAADAS EQAKDIAKKVFTRIQNAEASVHQTEHVHFHEVGADDAISDILGSVSAILSLNVDAVHILPLSTGMGTVTCSHGIMPVPAP ATAEILKASNLAVSLGSFEGELCTPTGAALLATFQEVFGTTVHSGKLLSSGAGAGTRDPSDHPNVLFAYIMDTGDEAGSV DVLETNVDDISGEVLSSVLSTMMNEGARDASVIPIVMKKGRPGYLIRVISLPRDAPRLAKILAHETGSLGVRCTPMIHRF IADRTIASTSVVINDRVYSVDVKIASMDGVVYSRKAEFDDLQRISDASGLPVRTVKRIVEEDVWKTP
Sequences:
>Translated_387_residues MRILVIDPRFGAAGDMILGALLGLGADREFVLRSVASVSKPEITNVLRAGIPATYIRTNTKKTTRNLSEILEIISAADAS EQAKDIAKKVFTRIQNAEASVHQTEHVHFHEVGADDAISDILGSVSAILSLNVDAVHILPLSTGMGTVTCSHGIMPVPAP ATAEILKASNLAVSLGSFEGELCTPTGAALLATFQEVFGTTVHSGKLLSSGAGAGTRDPSDHPNVLFAYIMDTGDEAGSV DVLETNVDDISGEVLSSVLSTMMNEGARDASVIPIVMKKGRPGYLIRVISLPRDAPRLAKILAHETGSLGVRCTPMIHRF IADRTIASTSVVINDRVYSVDVKIASMDGVVYSRKAEFDDLQRISDASGLPVRTVKRIVEEDVWKTP >Mature_387_residues MRILVIDPRFGAAGDMILGALLGLGADREFVLRSVASVSKPEITNVLRAGIPATYIRTNTKKTTRNLSEILEIISAADAS EQAKDIAKKVFTRIQNAEASVHQTEHVHFHEVGADDAISDILGSVSAILSLNVDAVHILPLSTGMGTVTCSHGIMPVPAP ATAEILKASNLAVSLGSFEGELCTPTGAALLATFQEVFGTTVHSGKLLSSGAGAGTRDPSDHPNVLFAYIMDTGDEAGSV DVLETNVDDISGEVLSSVLSTMMNEGARDASVIPIVMKKGRPGYLIRVISLPRDAPRLAKILAHETGSLGVRCTPMIHRF IADRTIASTSVVINDRVYSVDVKIASMDGVVYSRKAEFDDLQRISDASGLPVRTVKRIVEEDVWKTP
Specific function: Unknown
COG id: COG1641
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0272 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002822 [H]
Pfam domain/function: PF01969 DUF111 [H]
EC number: NA
Molecular weight: Translated: 41136; Mature: 41136
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILVIDPRFGAAGDMILGALLGLGADREFVLRSVASVSKPEITNVLRAGIPATYIRTNT CEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCC KKTTRNLSEILEIISAADASEQAKDIAKKVFTRIQNAEASVHQTEHVHFHEVGADDAISD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEECCCHHHHHH ILGSVSAILSLNVDAVHILPLSTGMGTVTCSHGIMPVPAPATAEILKASNLAVSLGSFEG HHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCC ELCTPTGAALLATFQEVFGTTVHSGKLLSSGAGAGTRDPSDHPNVLFAYIMDTGDEAGSV CEECCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCE DVLETNVDDISGEVLSSVLSTMMNEGARDASVIPIVMKKGRPGYLIRVISLPRDAPRLAK EEEECCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHH ILAHETGSLGVRCTPMIHRFIADRTIASTSVVINDRVYSVDVKIASMDGVVYSRKAEFDD HHHHCCCCCCEEEHHHHHHHHHHHHHCCEEEEEECEEEEEEEEEEEECCEEEECCCCHHH LQRISDASGLPVRTVKRIVEEDVWKTP HHHHHCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MRILVIDPRFGAAGDMILGALLGLGADREFVLRSVASVSKPEITNVLRAGIPATYIRTNT CEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCC KKTTRNLSEILEIISAADASEQAKDIAKKVFTRIQNAEASVHQTEHVHFHEVGADDAISD HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEECCCHHHHHH ILGSVSAILSLNVDAVHILPLSTGMGTVTCSHGIMPVPAPATAEILKASNLAVSLGSFEG HHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCC ELCTPTGAALLATFQEVFGTTVHSGKLLSSGAGAGTRDPSDHPNVLFAYIMDTGDEAGSV CEECCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCE DVLETNVDDISGEVLSSVLSTMMNEGARDASVIPIVMKKGRPGYLIRVISLPRDAPRLAK EEEECCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHH ILAHETGSLGVRCTPMIHRFIADRTIASTSVVINDRVYSVDVKIASMDGVVYSRKAEFDD HHHHCCCCCCEEEHHHHHHHHHHHHHCCEEEEEECEEEEEEEEEEEECCEEEECCCCHHH LQRISDASGLPVRTVKRIVEEDVWKTP HHHHHCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA