| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485713
Identifier: 124485713
GI number: 124485713
Start: 879513
End: 880592
Strand: Reverse
Name: 124485713
Synonym: Mlab_0891
Alternate gene names: NA
Gene position: 880592-879513 (Counterclockwise)
Preceding gene: 124485714
Following gene: 124485708
Centisome position: 48.79
GC content: 50.46
Gene sequence:
>1080_bases ATGAGCGGAAAGGGTCTCACCCCTGTCGAGGAGCTATCTGAGTTTCTGCTGTATAATACGGACGGGGGGAATACGCGTGT TCAGGTTCGACTGTATGAGGGGTCGGTGTGGCTATCTCAGCGTTTGATTGCTGATTTGTATGATAGGTCGCCAAAGACGG TGAGTGAACATATCGCGAATATTTTCGAGGAGGGTGAGCTTGAGCCGGAGAGAGTCACCCGGGTTTTTGATGTGGAGCAG GATGAGGGCGGTCGGTCGGTCGTCCGTTCGATCGTCTGCTATAATCTGGAGATGATTTTGGCGGTAGGATATCGTGCGAG GTCTGCCCGCGGGACGCAGTTTAGGAAGTGGGCAACGAAGCTTTTGCAGGAGTATGTGGTGAAAGGGTTTGTTCTTGATG ATGAGCGTTTAAAGGAGCCCGCAGGGTTTGGTCAGGATTATTTCGATGAGCTGCTTGAGCGGATTCGTGCGATTCGTGCG TCAGAGAAGCGGTTGTATCTGAAGGTTCGGGATATTTACGCGCTGAGTGTGGATTATGATAAGAATCATCCTGCTGCGAA GAAGTTTTTTGCAGCGGTGCAGAATAAGATCCATTTTGCGGTTCACGGTCATACGGCGGCGGAGATCATGGTTTTGCGGG CGAATGCCGATCTGCCGCATATGGGGCTTTCGACATGGAAGGAGAGTCCAAACGGGAAGATTCGTCTGGCTGATGTTTTG ACGGCGAAGAATTATCTTTCGAGTGAGGAGATCACGACGATGAATTCGCTGGTGAATCAGTTTCTGGAGTATGCGGAGCA GCAGGCACGTTCCAGAAAGGTTATGACGATGCATGACTGGGAGGTGAAGCTGGAAGCGATTCTCCGGCTGAATGATATGA GTATTCTTACGAGTGCCGGGAAGGTTTCGATGGAGCGGGCGAAGAGTAAGGCATCCCGGGAGTTCGAGGTGTTCGAGGCA CGGGAGCTGGAGCGGGAAACTGCGCAGGATGAAGATGAGTTGGAAGATGTGCTAAAAAAGCTAGTATATATCCCTAAATC TGATTCCAGCAAAGATAGTGAGTGTAATGAAAATAGATAA
Upstream 100 bases:
>100_bases AAGTGACCTATCTGAAAGCGTTGGTCAGGGTTCTTGAGGGAGATCTCGCAAAAACAGAGAAGAGACCGGCAGGTTTTCTT TCGAAGCTTGGGGTGGATGT
Downstream 100 bases:
>100_bases TCTTTTAAATGAAATCCCAACTGTCCGGTTTAACCGGATAGTTCGAAGTCAGATATTTGGCATGGATGCGGAATTTTTGG CCGGGCGGGAATACAGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MSGKGLTPVEELSEFLLYNTDGGNTRVQVRLYEGSVWLSQRLIADLYDRSPKTVSEHIANIFEEGELEPERVTRVFDVEQ DEGGRSVVRSIVCYNLEMILAVGYRARSARGTQFRKWATKLLQEYVVKGFVLDDERLKEPAGFGQDYFDELLERIRAIRA SEKRLYLKVRDIYALSVDYDKNHPAAKKFFAAVQNKIHFAVHGHTAAEIMVLRANADLPHMGLSTWKESPNGKIRLADVL TAKNYLSSEEITTMNSLVNQFLEYAEQQARSRKVMTMHDWEVKLEAILRLNDMSILTSAGKVSMERAKSKASREFEVFEA RELERETAQDEDELEDVLKKLVYIPKSDSSKDSECNENR
Sequences:
>Translated_359_residues MSGKGLTPVEELSEFLLYNTDGGNTRVQVRLYEGSVWLSQRLIADLYDRSPKTVSEHIANIFEEGELEPERVTRVFDVEQ DEGGRSVVRSIVCYNLEMILAVGYRARSARGTQFRKWATKLLQEYVVKGFVLDDERLKEPAGFGQDYFDELLERIRAIRA SEKRLYLKVRDIYALSVDYDKNHPAAKKFFAAVQNKIHFAVHGHTAAEIMVLRANADLPHMGLSTWKESPNGKIRLADVL TAKNYLSSEEITTMNSLVNQFLEYAEQQARSRKVMTMHDWEVKLEAILRLNDMSILTSAGKVSMERAKSKASREFEVFEA RELERETAQDEDELEDVLKKLVYIPKSDSSKDSECNENR >Mature_358_residues SGKGLTPVEELSEFLLYNTDGGNTRVQVRLYEGSVWLSQRLIADLYDRSPKTVSEHIANIFEEGELEPERVTRVFDVEQD EGGRSVVRSIVCYNLEMILAVGYRARSARGTQFRKWATKLLQEYVVKGFVLDDERLKEPAGFGQDYFDELLERIRAIRAS EKRLYLKVRDIYALSVDYDKNHPAAKKFFAAVQNKIHFAVHGHTAAEIMVLRANADLPHMGLSTWKESPNGKIRLADVLT AKNYLSSEEITTMNSLVNQFLEYAEQQARSRKVMTMHDWEVKLEAILRLNDMSILTSAGKVSMERAKSKASREFEVFEAR ELERETAQDEDELEDVLKKLVYIPKSDSSKDSECNENR
Specific function: Unknown
COG id: COG3943
COG function: function code R; Virulence protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41189; Mature: 41058
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKGLTPVEELSEFLLYNTDGGNTRVQVRLYEGSVWLSQRLIADLYDRSPKTVSEHIAN CCCCCCCCHHHHHHHHEEECCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH IFEEGELEPERVTRVFDVEQDEGGRSVVRSIVCYNLEMILAVGYRARSARGTQFRKWATK HHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHH LLQEYVVKGFVLDDERLKEPAGFGQDYFDELLERIRAIRASEKRLYLKVRDIYALSVDYD HHHHHHHHCEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCC KNHPAAKKFFAAVQNKIHFAVHGHTAAEIMVLRANADLPHMGLSTWKESPNGKIRLADVL CCCHHHHHHHHHHHHCEEEEEECCCEEEEEEEEECCCCCCCCHHHHCCCCCCCEEEHHHH TAKNYLSSEEITTMNSLVNQFLEYAEQQARSRKVMTMHDWEVKLEAILRLNDMSILTSAG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCHHHHHCCC KVSMERAKSKASREFEVFEARELERETAQDEDELEDVLKKLVYIPKSDSSKDSECNENR HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SGKGLTPVEELSEFLLYNTDGGNTRVQVRLYEGSVWLSQRLIADLYDRSPKTVSEHIAN CCCCCCCHHHHHHHHEEECCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH IFEEGELEPERVTRVFDVEQDEGGRSVVRSIVCYNLEMILAVGYRARSARGTQFRKWATK HHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHH LLQEYVVKGFVLDDERLKEPAGFGQDYFDELLERIRAIRASEKRLYLKVRDIYALSVDYD HHHHHHHHCEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCC KNHPAAKKFFAAVQNKIHFAVHGHTAAEIMVLRANADLPHMGLSTWKESPNGKIRLADVL CCCHHHHHHHHHHHHCEEEEEECCCEEEEEEEEECCCCCCCCHHHHCCCCCCCEEEHHHH TAKNYLSSEEITTMNSLVNQFLEYAEQQARSRKVMTMHDWEVKLEAILRLNDMSILTSAG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCHHHHHCCC KVSMERAKSKASREFEVFEARELERETAQDEDELEDVLKKLVYIPKSDSSKDSECNENR HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA