| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is yjjW [C]
Identifier: 124485353
GI number: 124485353
Start: 502689
End: 502862
Strand: Reverse
Name: yjjW [C]
Synonym: Mlab_0528
Alternate gene names: 124485353
Gene position: 502862-502689 (Counterclockwise)
Preceding gene: 124485354
Following gene: 124485352
Centisome position: 27.86
GC content: 51.15
Gene sequence:
>174_bases ATGCCAGCAGTAGTTAATAAAGAAAAATGTACCGGATGTGCGACCTGTGTGGACATCTGCCCGTCAGCAGCGATCGAACT TGTCGATGACAAGGCGGTAATCAGCGTCGATGACTGCGTTGACTGCGAAACCTGTGTGGACGAGTGCCCAGAAAGCGCTA TCCACATGGAGTAA
Upstream 100 bases:
>100_bases TACTTTGAACACCGACTGGAAAAGAGCAGCCCTTCACCAACTCGAAATGTATTTCCCCTTAGGATAAGAAATACAGTAAT TATACGAGGTAAATCCAAAA
Downstream 100 bases:
>100_bases TCCTTTTTTTTCTTTTCGAATTTCAAACCCGATTTTGCCGTATCCCAGCTGAAAAAAAGAGTGGGACGGATAGCTCTCGA TCAAAATGCTGATATGTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 57; Mature: 56
Protein sequence:
>57_residues MPAVVNKEKCTGCATCVDICPSAAIELVDDKAVISVDDCVDCETCVDECPESAIHME
Sequences:
>Translated_57_residues MPAVVNKEKCTGCATCVDICPSAAIELVDDKAVISVDDCVDCETCVDECPESAIHME >Mature_56_residues PAVVNKEKCTGCATCVDICPSAAIELVDDKAVISVDDCVDCETCVDECPESAIHME
Specific function: Unknown
COG id: COG1036
COG function: function code C; Archaeal flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6020; Mature: 5889
Theoretical pI: Translated: 3.70; Mature: 3.70
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
14.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 17.5 %Cys+Met (Translated Protein) 14.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 16.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAVVNKEKCTGCATCVDICPSAAIELVDDKAVISVDDCVDCETCVDECPESAIHME CCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure PAVVNKEKCTGCATCVDICPSAAIELVDDKAVISVDDCVDCETCVDECPESAIHME CCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA