Definition Methanocorpusculum labreanum Z chromosome, complete genome.
Accession NC_008942
Length 1,804,962

Click here to switch to the map view.

The map label for this gene is 124485330

Identifier: 124485330

GI number: 124485330

Start: 476820

End: 477446

Strand: Reverse

Name: 124485330

Synonym: Mlab_0505

Alternate gene names: NA

Gene position: 477446-476820 (Counterclockwise)

Preceding gene: 124485331

Following gene: 124485321

Centisome position: 26.45

GC content: 51.36

Gene sequence:

>627_bases
ATGGAGAAAATAGATTATAAAAAAGCATTTCCTGATCTGTATAAGCCGAAGACGAGCCCGTCCGCGGTGGATGTTCCGCC
CATGACCTTCATTATGGTCGACGGGAAAGGAAATCCGAACGATCCAAACGGTGAGTATCCCTGTGCGGTCGAGCTGCTCT
ACGGTCTTTCATACACGATCAAAATGAACAAAAAAGGGGAGACGAGGCCGAACGGCTACTTTGAGTATGTCGTGCCTCCG
CTTGAAGGGTTGTGGAGTCTGGACGACTCTGCCGACTTCAAAAACAAAGATACGTTCCTCTGGACATCCATGATCCGCCA
GCCGGAGTTCGTGACGGCTGAGGTGTTTGCAGAAACATGCCCCATGGTCGAAGAAAAGAAGCATCTGGATACGGCAAAGG
CGCGGCTCGAGATCTTTTCCGAAGGTCTTTGTGTCCAGTGCATGCATATAGGGCCCTTCGACGATGAACCGGCGACGCTT
GACAAGATGGATGCCTTCATCCGCGAAAACGGTTTTGTCCATGACTTCGCCGGCCGCCGGCATCATGAGATTTATCTTTC
GGATCCGCGAAAAACCGAACCAGCGAAGATGAAGACCATCCTTCGGGTGCCGGTAAAAAAAGCGTGA

Upstream 100 bases:

>100_bases
ATAAGATGTGTGCCGAGTGCCCGCATTTTGGAAAATGGGTTTCCTGGATCAAAACGCTCCCTGAAACGGCAAAACAAACC
GAACGTGAGAAGTAAGAAAA

Downstream 100 bases:

>100_bases
GTGTTTATCCGTTTTTCCGGATGAACAGTTCCGTTCTACTGCGGATCTCTTCGGGGGAGAGAGGGATATTGGGGGACGCC
GAGTTTTCCGGGCGTATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MEKIDYKKAFPDLYKPKTSPSAVDVPPMTFIMVDGKGNPNDPNGEYPCAVELLYGLSYTIKMNKKGETRPNGYFEYVVPP
LEGLWSLDDSADFKNKDTFLWTSMIRQPEFVTAEVFAETCPMVEEKKHLDTAKARLEIFSEGLCVQCMHIGPFDDEPATL
DKMDAFIRENGFVHDFAGRRHHEIYLSDPRKTEPAKMKTILRVPVKKA

Sequences:

>Translated_208_residues
MEKIDYKKAFPDLYKPKTSPSAVDVPPMTFIMVDGKGNPNDPNGEYPCAVELLYGLSYTIKMNKKGETRPNGYFEYVVPP
LEGLWSLDDSADFKNKDTFLWTSMIRQPEFVTAEVFAETCPMVEEKKHLDTAKARLEIFSEGLCVQCMHIGPFDDEPATL
DKMDAFIRENGFVHDFAGRRHHEIYLSDPRKTEPAKMKTILRVPVKKA
>Mature_208_residues
MEKIDYKKAFPDLYKPKTSPSAVDVPPMTFIMVDGKGNPNDPNGEYPCAVELLYGLSYTIKMNKKGETRPNGYFEYVVPP
LEGLWSLDDSADFKNKDTFLWTSMIRQPEFVTAEVFAETCPMVEEKKHLDTAKARLEIFSEGLCVQCMHIGPFDDEPATL
DKMDAFIRENGFVHDFAGRRHHEIYLSDPRKTEPAKMKTILRVPVKKA

Specific function: Unknown

COG id: COG4832

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23746; Mature: 23746

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIDYKKAFPDLYKPKTSPSAVDVPPMTFIMVDGKGNPNDPNGEYPCAVELLYGLSYTI
CCCCCCHHHCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHEECCCEEEE
KMNKKGETRPNGYFEYVVPPLEGLWSLDDSADFKNKDTFLWTSMIRQPEFVTAEVFAETC
EECCCCCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHC
PMVEEKKHLDTAKARLEIFSEGLCVQCMHIGPFDDEPATLDKMDAFIRENGFVHDFAGRR
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEECCCCCE
HHEIYLSDPRKTEPAKMKTILRVPVKKA
EEEEEECCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MEKIDYKKAFPDLYKPKTSPSAVDVPPMTFIMVDGKGNPNDPNGEYPCAVELLYGLSYTI
CCCCCCHHHCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHEECCCEEEE
KMNKKGETRPNGYFEYVVPPLEGLWSLDDSADFKNKDTFLWTSMIRQPEFVTAEVFAETC
EECCCCCCCCCCEEEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHC
PMVEEKKHLDTAKARLEIFSEGLCVQCMHIGPFDDEPATLDKMDAFIRENGFVHDFAGRR
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEECCCCCE
HHEIYLSDPRKTEPAKMKTILRVPVKKA
EEEEEECCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA