| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485305
Identifier: 124485305
GI number: 124485305
Start: 454185
End: 455312
Strand: Reverse
Name: 124485305
Synonym: Mlab_0480
Alternate gene names: NA
Gene position: 455312-454185 (Counterclockwise)
Preceding gene: 124485306
Following gene: 124485301
Centisome position: 25.23
GC content: 55.32
Gene sequence:
>1128_bases ATGACCGGTAAGGAAAAATCCGGCGGCGTCCTCGAACGCCGCGGAGCATTTCTCACAGCCATGAGGCAGATGACCTTCGA AGCAGGGCACTTCACCACTGCTGATCTGGCATCTGCCGCCAATGTCCCCCGTTCAACGGCCCAGGACTGGATTAACCGGA TGATAAAAGAGGGCTGCATCTTCGTGAAAGAAGAGCCTCACGGAAGAAATCCCGCACATTACGCCTCGAGAAGTGCCCTT CCTCAGACCACCTGCAAACGTATTTTTACAACTCTTGACGGCAGGGACGTGGAAATTTTTCACGAGTGTCTCTCGAGCGG CTGTGCGGGATTCTGCGAATTTCATCACCGGAAAGCCGGCGGAGCGGCAATCTCCGTTACCCGCGACGGGATGATCTTTC GCGAACGATCAAGGATCGGCGAGGAGAATGAACTCAGACTTGATTTTGCCGCAGTAGGTCTTGCTGCGGTCAAAAAAGAC GGAGCCGACATCATACAGACGATCCATTCGATCCCCGGAGGGCCCGCATACTCGTTATCGGCGATGATGGGGCATGCAAA AGGAGTAAAGGGCGTACAGATTACGGTTGGAAACGGCGTAGTCACCGGTGAAGTTCGAACCCCGGCACTTACCCCCGTAA CGATCGGCGTCGATGATACCGACCGGAAAGGATGCGGCGGCGCGACCTTTGCCCTGTCCCAGGCTCTGATGAAGTATCTG ACGGATCCTGGAAGTGTGATCGGGATAAGACATCAGGTCGCCGCCCTCTGTCAGGACATCGAAGAAAAAACCGCAGGAAA CTCCTGCAGCTTCATCGAACTTGCCGTTGATCCGAGCGTTCTCCCAACGCTTGCCGCAAAGGTCTGCAGATTTGTCGATG AGGAAAGCGTCTCCGATGAATGGGGTGTCGCCATCATGACGAGCATCACCGTGCCGGAAGGTCTTCTCAGGCTTGGCGAA AAGATCCGTCGTGAACGCGTTTCCATGGAAGAAGTCCTAGAGACTGCGAAAAGGTCGGGCGTTCAGGTCTACGGGAAAAA AGGCATCATCGGGGCGGTCGGGGCGGTCAGTCTGAAATCACAGCCGCAGGAAATCCTTCTGGATCCGGCATGTCCGATTG TCTTCTGA
Upstream 100 bases:
>100_bases ACCGAGTATGCCGGCGCGATCACCTTCATCGGCCGGGGCGCAGGATCTGTTGAAACGGCCAGTGCGATCCTGGCGGATCT TCTCTTTATCACAGACAAAT
Downstream 100 bases:
>100_bases ATTATTTTTAACAAAAATAGCGAGGGTTAGTGTACCCACTCTCCCCGGGCATTTCCTGAGAGTTCCTGTTTCCAGATCGG CACTTTTTCCTTCAGTTTTT
Product: ribosomal protein L15-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MTGKEKSGGVLERRGAFLTAMRQMTFEAGHFTTADLASAANVPRSTAQDWINRMIKEGCIFVKEEPHGRNPAHYASRSAL PQTTCKRIFTTLDGRDVEIFHECLSSGCAGFCEFHHRKAGGAAISVTRDGMIFRERSRIGEENELRLDFAAVGLAAVKKD GADIIQTIHSIPGGPAYSLSAMMGHAKGVKGVQITVGNGVVTGEVRTPALTPVTIGVDDTDRKGCGGATFALSQALMKYL TDPGSVIGIRHQVAALCQDIEEKTAGNSCSFIELAVDPSVLPTLAAKVCRFVDEESVSDEWGVAIMTSITVPEGLLRLGE KIRRERVSMEEVLETAKRSGVQVYGKKGIIGAVGAVSLKSQPQEILLDPACPIVF
Sequences:
>Translated_375_residues MTGKEKSGGVLERRGAFLTAMRQMTFEAGHFTTADLASAANVPRSTAQDWINRMIKEGCIFVKEEPHGRNPAHYASRSAL PQTTCKRIFTTLDGRDVEIFHECLSSGCAGFCEFHHRKAGGAAISVTRDGMIFRERSRIGEENELRLDFAAVGLAAVKKD GADIIQTIHSIPGGPAYSLSAMMGHAKGVKGVQITVGNGVVTGEVRTPALTPVTIGVDDTDRKGCGGATFALSQALMKYL TDPGSVIGIRHQVAALCQDIEEKTAGNSCSFIELAVDPSVLPTLAAKVCRFVDEESVSDEWGVAIMTSITVPEGLLRLGE KIRRERVSMEEVLETAKRSGVQVYGKKGIIGAVGAVSLKSQPQEILLDPACPIVF >Mature_374_residues TGKEKSGGVLERRGAFLTAMRQMTFEAGHFTTADLASAANVPRSTAQDWINRMIKEGCIFVKEEPHGRNPAHYASRSALP QTTCKRIFTTLDGRDVEIFHECLSSGCAGFCEFHHRKAGGAAISVTRDGMIFRERSRIGEENELRLDFAAVGLAAVKKDG ADIIQTIHSIPGGPAYSLSAMMGHAKGVKGVQITVGNGVVTGEVRTPALTPVTIGVDDTDRKGCGGATFALSQALMKYLT DPGSVIGIRHQVAALCQDIEEKTAGNSCSFIELAVDPSVLPTLAAKVCRFVDEESVSDEWGVAIMTSITVPEGLLRLGEK IRRERVSMEEVLETAKRSGVQVYGKKGIIGAVGAVSLKSQPQEILLDPACPIVF
Specific function: Unknown
COG id: COG1571
COG function: function code R; Predicted DNA-binding protein containing a Zn-ribbon domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40134; Mature: 40002
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGKEKSGGVLERRGAFLTAMRQMTFEAGHFTTADLASAANVPRSTAQDWINRMIKEGCI CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCEE FVKEEPHGRNPAHYASRSALPQTTCKRIFTTLDGRDVEIFHECLSSGCAGFCEFHHRKAG EEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHCCC GAAISVTRDGMIFRERSRIGEENELRLDFAAVGLAAVKKDGADIIQTIHSIPGGPAYSLS CEEEEEECCCCEEHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHH AMMGHAKGVKGVQITVGNGVVTGEVRTPALTPVTIGVDDTDRKGCGGATFALSQALMKYL HHHHHHCCCCEEEEEECCEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH TDPGSVIGIRHQVAALCQDIEEKTAGNSCSFIELAVDPSVLPTLAAKVCRFVDEESVSDE CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCC WGVAIMTSITVPEGLLRLGEKIRRERVSMEEVLETAKRSGVQVYGKKGIIGAVGAVSLKS CCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCEECCCHHHCCC QPQEILLDPACPIVF CCHHHEECCCCCCCC >Mature Secondary Structure TGKEKSGGVLERRGAFLTAMRQMTFEAGHFTTADLASAANVPRSTAQDWINRMIKEGCI CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCEE FVKEEPHGRNPAHYASRSALPQTTCKRIFTTLDGRDVEIFHECLSSGCAGFCEFHHRKAG EEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHCCC GAAISVTRDGMIFRERSRIGEENELRLDFAAVGLAAVKKDGADIIQTIHSIPGGPAYSLS CEEEEEECCCCEEHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHH AMMGHAKGVKGVQITVGNGVVTGEVRTPALTPVTIGVDDTDRKGCGGATFALSQALMKYL HHHHHHCCCCEEEEEECCEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH TDPGSVIGIRHQVAALCQDIEEKTAGNSCSFIELAVDPSVLPTLAAKVCRFVDEESVSDE CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCC WGVAIMTSITVPEGLLRLGEKIRRERVSMEEVLETAKRSGVQVYGKKGIIGAVGAVSLKS CCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCEECCCHHHCCC QPQEILLDPACPIVF CCHHHEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA