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The map label for this gene is 124485197

Identifier: 124485197

GI number: 124485197

Start: 348198

End: 348662

Strand: Reverse

Name: 124485197

Synonym: Mlab_0370

Alternate gene names: NA

Gene position: 348662-348198 (Counterclockwise)

Preceding gene: 124485201

Following gene: 124485196

Centisome position: 19.32

GC content: 52.26

Gene sequence:

>465_bases
ATGTCGCTTCGCGGGTCAACGGCACGACTGACGCTACCGACAGCTGATCAAATGCATATAACCCTGAAGTTTCTTGGAGA
GATCCCGGAGGTGAAAATCCCGAAAATTGCGGGAGCTCTGGAAAAAGTGAGGGGCGCCCCGTTCCAGCTACAGGCAGCAC
GGGTCAGTACATTTGGGCGGCGGGTCATCAAAGCCGAAGTAACCGATCAGAGCTGCTGTGCGGATATTGCAAAACAAATC
GACGGGCTTTTGCTCCCGCTTGGATTTCCCAAAGAAGCACGCCCGTTCTCCCCCCACATCACCCTTGCCCGGATCAAAGA
GTATGCACCGGATCTCCAGGAAAAAACGGATGCACTTTGCGACGCCGAATTTGGTACATGTATGATCGAAGAAATCCTCC
TAAAACAGAGCACATTAACCCCACGGGGATCCATATATACAACACTTGCCCGGGTGAAGTTATGA

Upstream 100 bases:

>100_bases
ATCATAATGCATGAGAAGCAAATATTCTCCAAGAATGGTTCGGGTATTCATAGCAGTTGAACCTGCAAAGGAGATAAGAG
AGAGGCTGGAGGTGGCCGGG

Downstream 100 bases:

>100_bases
GAGATCCAATTGAGGAGGAAGTATTACAAAATATCCGGCCCACGGAAGAAGAGCGGCACGAAGTTTTTGAGATGGGACAA
AAACTCATCGAAGCGGTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSLRGSTARLTLPTADQMHITLKFLGEIPEVKIPKIAGALEKVRGAPFQLQAARVSTFGRRVIKAEVTDQSCCADIAKQI
DGLLLPLGFPKEARPFSPHITLARIKEYAPDLQEKTDALCDAEFGTCMIEEILLKQSTLTPRGSIYTTLARVKL

Sequences:

>Translated_154_residues
MSLRGSTARLTLPTADQMHITLKFLGEIPEVKIPKIAGALEKVRGAPFQLQAARVSTFGRRVIKAEVTDQSCCADIAKQI
DGLLLPLGFPKEARPFSPHITLARIKEYAPDLQEKTDALCDAEFGTCMIEEILLKQSTLTPRGSIYTTLARVKL
>Mature_153_residues
SLRGSTARLTLPTADQMHITLKFLGEIPEVKIPKIAGALEKVRGAPFQLQAARVSTFGRRVIKAEVTDQSCCADIAKQID
GLLLPLGFPKEARPFSPHITLARIKEYAPDLQEKTDALCDAEFGTCMIEEILLKQSTLTPRGSIYTTLARVKL

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 16922; Mature: 16791

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRGSTARLTLPTADQMHITLKFLGEIPEVKIPKIAGALEKVRGAPFQLQAARVSTFGR
CCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHH
RVIKAEVTDQSCCADIAKQIDGLLLPLGFPKEARPFSPHITLARIKEYAPDLQEKTDALC
HHEEEECCCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
DAEFGTCMIEEILLKQSTLTPRGSIYTTLARVKL
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SLRGSTARLTLPTADQMHITLKFLGEIPEVKIPKIAGALEKVRGAPFQLQAARVSTFGR
CCCCCCEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHH
RVIKAEVTDQSCCADIAKQIDGLLLPLGFPKEARPFSPHITLARIKEYAPDLQEKTDALC
HHEEEECCCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
DAEFGTCMIEEILLKQSTLTPRGSIYTTLARVKL
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]