| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124484840
Identifier: 124484840
GI number: 124484840
Start: 11177
End: 12001
Strand: Reverse
Name: 124484840
Synonym: Mlab_0011
Alternate gene names: NA
Gene position: 12001-11177 (Counterclockwise)
Preceding gene: 124484841
Following gene: 124484839
Centisome position: 0.66
GC content: 49.21
Gene sequence:
>825_bases ATGTACCTCTTTATCATGAGCGATACCTCCGCACCTGCGCCGAAAAAAAGAACGGTAAAATCCAAAAAGGATAAAACACC TGAACCAAAACCGGTAAAAATCCCGGAGACTGATCTCCCGGCAGAAGAGACGACCGCTCAGTCCAACGAACAGCCGGCCG ATACACACAAACCGGTTCCCGAGCAGTTTTTGACGGATCTTGGATCGCTTGCAGAAATTCTTGAGGCGAATCCCACCATC CTTGAACCCATCCGAGAGGTCTTCGAATACCATCTTGTCGACCCGATCGACCGGAAAACCTTCCCGAAACTCGTCAATGC CATGTCGATGCTCCTTGGGGCAAATGCGACAATGGTCCTCATGACGGCCTGTCATGTCAACTCAGCGGCATTTTTCGATG ATTTGCTGCATGCGATCAAAGAAGAAAAACAAAAAAGTGCCGTCTGGATCATCCAGCATCTAACATCCCTCTATGGGAAC CGTGTCCAGCAGGCATACACACTCTCTGCCGGCACGATGGATGAAGACTGGCACATGATCGATGTCAACACCTATAAGCG GGAAGGCGACACGCCGCTTTGGATACTCAGCCTTGAACTCGTGCTCTACAACGGAACGGAAACCAAAATCACGATGACGC CTGACTCCGTCTTCCAACTGGTCGAGATACTTTCTGCCGAACTCGCAAAAAATATCCCAAAGGAAAATGTGGACGAAGGA CTCATCACCAAATGCGAAAAGAACTTCACCGCATTTTATGAAAAGTTCTACAAAGGCAAAGATGAAGAGAGAAATGAGGA CGAACACCCGCCAGGGTATGCGTGA
Upstream 100 bases:
>100_bases AATGGATTACGACATGTACCCATCCTCTCGGGTACACTTTTTTTGAGGAAAATTTTTCCCTAGGGCAAACCCCAAACGAA CATCTTTTCATCTCTCAAGG
Downstream 100 bases:
>100_bases AAGCGCTTGATTGTCCTTTTTGGAAAAAACAACGTATAAGGCTTGCAACTCTCCTGTTGCCGGAGAGTAGATACAGAATT TATCAGACAAATAAAACGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MYLFIMSDTSAPAPKKRTVKSKKDKTPEPKPVKIPETDLPAEETTAQSNEQPADTHKPVPEQFLTDLGSLAEILEANPTI LEPIREVFEYHLVDPIDRKTFPKLVNAMSMLLGANATMVLMTACHVNSAAFFDDLLHAIKEEKQKSAVWIIQHLTSLYGN RVQQAYTLSAGTMDEDWHMIDVNTYKREGDTPLWILSLELVLYNGTETKITMTPDSVFQLVEILSAELAKNIPKENVDEG LITKCEKNFTAFYEKFYKGKDEERNEDEHPPGYA
Sequences:
>Translated_274_residues MYLFIMSDTSAPAPKKRTVKSKKDKTPEPKPVKIPETDLPAEETTAQSNEQPADTHKPVPEQFLTDLGSLAEILEANPTI LEPIREVFEYHLVDPIDRKTFPKLVNAMSMLLGANATMVLMTACHVNSAAFFDDLLHAIKEEKQKSAVWIIQHLTSLYGN RVQQAYTLSAGTMDEDWHMIDVNTYKREGDTPLWILSLELVLYNGTETKITMTPDSVFQLVEILSAELAKNIPKENVDEG LITKCEKNFTAFYEKFYKGKDEERNEDEHPPGYA >Mature_274_residues MYLFIMSDTSAPAPKKRTVKSKKDKTPEPKPVKIPETDLPAEETTAQSNEQPADTHKPVPEQFLTDLGSLAEILEANPTI LEPIREVFEYHLVDPIDRKTFPKLVNAMSMLLGANATMVLMTACHVNSAAFFDDLLHAIKEEKQKSAVWIIQHLTSLYGN RVQQAYTLSAGTMDEDWHMIDVNTYKREGDTPLWILSLELVLYNGTETKITMTPDSVFQLVEILSAELAKNIPKENVDEG LITKCEKNFTAFYEKFYKGKDEERNEDEHPPGYA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31022; Mature: 31022
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLFIMSDTSAPAPKKRTVKSKKDKTPEPKPVKIPETDLPAEETTAQSNEQPADTHKPVP CEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCH EQFLTDLGSLAEILEANPTILEPIREVFEYHLVDPIDRKTFPKLVNAMSMLLGANATMVL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHH MTACHVNSAAFFDDLLHAIKEEKQKSAVWIIQHLTSLYGNRVQQAYTLSAGTMDEDWHMI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEE DVNTYKREGDTPLWILSLELVLYNGTETKITMTPDSVFQLVEILSAELAKNIPKENVDEG ECEEECCCCCCCEEEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHH LITKCEKNFTAFYEKFYKGKDEERNEDEHPPGYA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MYLFIMSDTSAPAPKKRTVKSKKDKTPEPKPVKIPETDLPAEETTAQSNEQPADTHKPVP CEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCH EQFLTDLGSLAEILEANPTILEPIREVFEYHLVDPIDRKTFPKLVNAMSMLLGANATMVL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHH MTACHVNSAAFFDDLLHAIKEEKQKSAVWIIQHLTSLYGNRVQQAYTLSAGTMDEDWHMI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEE DVNTYKREGDTPLWILSLELVLYNGTETKITMTPDSVFQLVEILSAELAKNIPKENVDEG ECEEECCCCCCCEEEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHH LITKCEKNFTAFYEKFYKGKDEERNEDEHPPGYA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA