Click here to switch to the map view.

The map label for this gene is ybdD [H]

Identifier: 124266217

GI number: 124266217

Start: 1094361

End: 1094579

Strand: Reverse

Name: ybdD [H]

Synonym: Mpe_A1024

Alternate gene names: 124266217

Gene position: 1094579-1094361 (Counterclockwise)

Preceding gene: 124266218

Following gene: 124266214

Centisome position: 27.07

GC content: 69.86

Gene sequence:

>219_bases
ATGGCCTCCGGCAGCTTCACCGGCTTGTTGCAAGACGTCGAGAAGGCGGGCCGCTACCTCGGCCAAGCCATGCGCCTGAT
GGTCGGCCAGCCCGACTACGAGGCCTACGCGGCGCATGCCAGGACGGTCCACCCGGACCGGCCGGTGATGAGCTACGAGG
ACTTCTTCCGCGAGCGCCAGCAGGCCCGCTACGGGTCGCGCACCGGCCGCTGCTGCTGA

Upstream 100 bases:

>100_bases
CTGGGCAACCAGTCGCCGACCGTGCGCGAAACGCCGTTCGAACCGATGCCGCAAGGCGCCGGCGGCTGAACGCTCGCTCT
GCTTCCACAGCGCCCGCCCC

Downstream 100 bases:

>100_bases
AGCCGACCGGCGAGCCCCGCCTCGTTCGTTTCCCCGGGCGCCTGGCAAAACCGGGCGTCCGGGACCTTGAAGCCGGCGCG
CATGACGCGCCGGCCGTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MASGSFTGLLQDVEKAGRYLGQAMRLMVGQPDYEAYAAHARTVHPDRPVMSYEDFFRERQQARYGSRTGRCC

Sequences:

>Translated_72_residues
MASGSFTGLLQDVEKAGRYLGQAMRLMVGQPDYEAYAAHARTVHPDRPVMSYEDFFRERQQARYGSRTGRCC
>Mature_71_residues
ASGSFTGLLQDVEKAGRYLGQAMRLMVGQPDYEAYAAHARTVHPDRPVMSYEDFFRERQQARYGSRTGRCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=56.9230769230769, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=52.2388059701493, Blast_Score=79, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 8192; Mature: 8061

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGSFTGLLQDVEKAGRYLGQAMRLMVGQPDYEAYAAHARTVHPDRPVMSYEDFFRERQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHH
QARYGSRTGRCC
HHHHCCCCCCCC
>Mature Secondary Structure 
ASGSFTGLLQDVEKAGRYLGQAMRLMVGQPDYEAYAAHARTVHPDRPVMSYEDFFRERQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHH
QARYGSRTGRCC
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]