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The map label for this gene is cph2 [H]

Identifier: 124266191

GI number: 124266191

Start: 1059410

End: 1060945

Strand: Reverse

Name: cph2 [H]

Synonym: Mpe_A0998

Alternate gene names: 124266191

Gene position: 1060945-1059410 (Counterclockwise)

Preceding gene: 124266192

Following gene: 124266190

Centisome position: 26.23

GC content: 71.16

Gene sequence:

>1536_bases
ATGGCCGATATCCCTGTTCCCGAACGCAGCGGCTCGATGACCCCGACGATGCTCTCCCCGCAAACGAACACGCAGGCCGA
CCGACCGCCGGCATGGTGGGTCTACCTGCTGCTGCCCTTGCTGCATTTCGCCAGCGTCAAGCTGACCTTCCTGTGCGCCG
TGTCGCCCGAGAACGAGGTGGTGATCTGGCTGCCCAACGCCGTGCTGCTGGCAGCGCTGCTCCACTTCCGCGGCCGGCGC
GGCGGCTGGCTAGCCCTGCTGACGTTCAGTTCCGACGTGCTCGCCAACCTGCCGGTGTTCCCGCCGCTGCAGGCGGTGCT
GCTGAGCCTCGTCAACCTCACGGAAGTGACGCTGGCCTACCTGCTGCTGCGCCGCGCAGGCACGTCGCCGGCGTTGGACC
GGATCCAGGACCTGGGCAAGTTCGTCGTCATCGGCCCGCTGCTCTGCGCGCTCGTCGCCGCGCTGCTGGCGAGTCTGGTG
CTGCAGGCGATGGACGGCGTGAAGACGCCCTATCCCACGCTGGTGCTGCTGTGGTGGTTCGGTGACGGCCTGGGGCTGCT
GATCTTCACGCCGATGCTGCTGGCGCTGGCGCAGCCCGCGCCGGAGCCGATCCGGCTGCGCTGGCAGGACGGACCGGTGC
TGCTGTTCACCGGCGCGCTGGCAGGGCTGATCCTGTCGGGGCAGTCGGAGCGCTGGAGCGGCGTGCCGCTGACGCCGAAC
CTGCTGCTGCCGCCGATGCTGTACATCGCAGTCCGCTTCGGCACGCGCTGGACCGCGCCGGCGGTCGCGCTCATCGCGCT
GGCGGCCGCCTGGGCCCAGACCACCGGCCACAAGCCCTTCGGCGAGGCCTCGCCGCACGAACTGATCCTGCGCACCCAGG
AGTTCATCCTGACGCTCAGCATCGTCGGCATGGGCTTCGCCACGCTGCTGAGCGAGCAGCGTGCGCTGACGCGCAGCCTG
GAGGACAAGGTGCGCGAGCGCACCCTGAAGCTGGAGGAGTCCAACAGCCAGCTGGGCACGCTGAGCACCACCGATGGCCT
GACCGGCATCGCCAACCGGCGGCGCTTCGACGAGTTCATCGCCGGCGAATGGCGCCACGCCCGCGTCACCGGCCAGCCGC
TGGCGCTGGCGCTGCTGGATGTGGATCTGTTCAAGCATTACAACGACCGCTACGGCCACCAGGCCGGCGACGACTGCCTG
CGCACCATCGCGCAGGTGCTCGGCGCCAACGTGCGCCGCGCCGGCGACCTGGTGGCGCGCTACGGCGGCGAGGAGTTCGC
CCTGGTGGCGGTGGCGGCCGACGAGGCCAGCGCGCTCGCCATGTCGCGCGGCATCTGCCAGGCCCTCGAGGCGCTGGCGC
ACCGCCACGAGCTGTCGCCGTTCGGCGTGGTCACCGCCAGCATCGGCGTGGCGGTGCTGGTGCCCGGCGAGCACGACACG
CACGAGACGCTCATCCGCCGGGCCGACCGGGCGCTCTACCAGGCCAAGGCGAACGGCCGCAACCAGGCGGTGCTGGCGGG
CGACGCCCCGGCCTGA

Upstream 100 bases:

>100_bases
GCCGGTGCCGCATTGATCGACGCTCCACATCGGGCATCCTTCACGACCGGCCCGACCGGGCCGCCGTGTCGGGCCGCGAG
GCCTGCGATGCTCACCCCGA

Downstream 100 bases:

>100_bases
CCCGCACCCCGGCGCACCGCGCGCCCTGTGTCCGACTATCCTTCGCGCTTGCCTCCGGCGGCGTGATCGATCGTGTCGCG
CCGCGCCGTTCCACCGCTCG

Product: PleD

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MADIPVPERSGSMTPTMLSPQTNTQADRPPAWWVYLLLPLLHFASVKLTFLCAVSPENEVVIWLPNAVLLAALLHFRGRR
GGWLALLTFSSDVLANLPVFPPLQAVLLSLVNLTEVTLAYLLLRRAGTSPALDRIQDLGKFVVIGPLLCALVAALLASLV
LQAMDGVKTPYPTLVLLWWFGDGLGLLIFTPMLLALAQPAPEPIRLRWQDGPVLLFTGALAGLILSGQSERWSGVPLTPN
LLLPPMLYIAVRFGTRWTAPAVALIALAAAWAQTTGHKPFGEASPHELILRTQEFILTLSIVGMGFATLLSEQRALTRSL
EDKVRERTLKLEESNSQLGTLSTTDGLTGIANRRRFDEFIAGEWRHARVTGQPLALALLDVDLFKHYNDRYGHQAGDDCL
RTIAQVLGANVRRAGDLVARYGGEEFALVAVAADEASALAMSRGICQALEALAHRHELSPFGVVTASIGVAVLVPGEHDT
HETLIRRADRALYQAKANGRNQAVLAGDAPA

Sequences:

>Translated_511_residues
MADIPVPERSGSMTPTMLSPQTNTQADRPPAWWVYLLLPLLHFASVKLTFLCAVSPENEVVIWLPNAVLLAALLHFRGRR
GGWLALLTFSSDVLANLPVFPPLQAVLLSLVNLTEVTLAYLLLRRAGTSPALDRIQDLGKFVVIGPLLCALVAALLASLV
LQAMDGVKTPYPTLVLLWWFGDGLGLLIFTPMLLALAQPAPEPIRLRWQDGPVLLFTGALAGLILSGQSERWSGVPLTPN
LLLPPMLYIAVRFGTRWTAPAVALIALAAAWAQTTGHKPFGEASPHELILRTQEFILTLSIVGMGFATLLSEQRALTRSL
EDKVRERTLKLEESNSQLGTLSTTDGLTGIANRRRFDEFIAGEWRHARVTGQPLALALLDVDLFKHYNDRYGHQAGDDCL
RTIAQVLGANVRRAGDLVARYGGEEFALVAVAADEASALAMSRGICQALEALAHRHELSPFGVVTASIGVAVLVPGEHDT
HETLIRRADRALYQAKANGRNQAVLAGDAPA
>Mature_510_residues
ADIPVPERSGSMTPTMLSPQTNTQADRPPAWWVYLLLPLLHFASVKLTFLCAVSPENEVVIWLPNAVLLAALLHFRGRRG
GWLALLTFSSDVLANLPVFPPLQAVLLSLVNLTEVTLAYLLLRRAGTSPALDRIQDLGKFVVIGPLLCALVAALLASLVL
QAMDGVKTPYPTLVLLWWFGDGLGLLIFTPMLLALAQPAPEPIRLRWQDGPVLLFTGALAGLILSGQSERWSGVPLTPNL
LLPPMLYIAVRFGTRWTAPAVALIALAAAWAQTTGHKPFGEASPHELILRTQEFILTLSIVGMGFATLLSEQRALTRSLE
DKVRERTLKLEESNSQLGTLSTTDGLTGIANRRRFDEFIAGEWRHARVTGQPLALALLDVDLFKHYNDRYGHQAGDDCLR
TIAQVLGANVRRAGDLVARYGGEEFALVAVAADEASALAMSRGICQALEALAHRHELSPFGVVTASIGVAVLVPGEHDTH
ETLIRRADRALYQAKANGRNQAVLAGDAPA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=32.7683615819209, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=37.9888268156425, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=37.5690607734807, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=39.7590361445783, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=35.8024691358025, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=29.9435028248588, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=31.8181818181818, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787802, Length=346, Percent_Identity=28.3236994219653, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=32.5842696629214, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=189, Percent_Identity=35.978835978836, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87082007, Length=139, Percent_Identity=35.2517985611511, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=30.379746835443, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55345; Mature: 55214

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIPVPERSGSMTPTMLSPQTNTQADRPPAWWVYLLLPLLHFASVKLTFLCAVSPENEV
CCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCE
VIWLPNAVLLAALLHFRGRRGGWLALLTFSSDVLANLPVFPPLQAVLLSLVNLTEVTLAY
EEECCCHHHHHHHHHHCCCCCCEEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LLLRRAGTSPALDRIQDLGKFVVIGPLLCALVAALLASLVLQAMDGVKTPYPTLVLLWWF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
GDGLGLLIFTPMLLALAQPAPEPIRLRWQDGPVLLFTGALAGLILSGQSERWSGVPLTPN
CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCC
LLLPPMLYIAVRFGTRWTAPAVALIALAAAWAQTTGHKPFGEASPHELILRTQEFILTLS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
IVGMGFATLLSEQRALTRSLEDKVRERTLKLEESNSQLGTLSTTDGLTGIANRRRFDEFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHH
AGEWRHARVTGQPLALALLDVDLFKHYNDRYGHQAGDDCLRTIAQVLGANVRRAGDLVAR
HCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
YGGEEFALVAVAADEASALAMSRGICQALEALAHRHELSPFGVVTASIGVAVLVPGEHDT
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCEEEEECCCCCH
HETLIRRADRALYQAKANGRNQAVLAGDAPA
HHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
>Mature Secondary Structure 
ADIPVPERSGSMTPTMLSPQTNTQADRPPAWWVYLLLPLLHFASVKLTFLCAVSPENEV
CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCE
VIWLPNAVLLAALLHFRGRRGGWLALLTFSSDVLANLPVFPPLQAVLLSLVNLTEVTLAY
EEECCCHHHHHHHHHHCCCCCCEEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LLLRRAGTSPALDRIQDLGKFVVIGPLLCALVAALLASLVLQAMDGVKTPYPTLVLLWWF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
GDGLGLLIFTPMLLALAQPAPEPIRLRWQDGPVLLFTGALAGLILSGQSERWSGVPLTPN
CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCC
LLLPPMLYIAVRFGTRWTAPAVALIALAAAWAQTTGHKPFGEASPHELILRTQEFILTLS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
IVGMGFATLLSEQRALTRSLEDKVRERTLKLEESNSQLGTLSTTDGLTGIANRRRFDEFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHH
AGEWRHARVTGQPLALALLDVDLFKHYNDRYGHQAGDDCLRTIAQVLGANVRRAGDLVAR
HCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
YGGEEFALVAVAADEASALAMSRGICQALEALAHRHELSPFGVVTASIGVAVLVPGEHDT
CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCEEEEECCCCCH
HETLIRRADRALYQAKANGRNQAVLAGDAPA
HHHHHHHHHHHHHHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]