| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is 124266138
Identifier: 124266138
GI number: 124266138
Start: 1000573
End: 1002141
Strand: Reverse
Name: 124266138
Synonym: Mpe_A0945
Alternate gene names: NA
Gene position: 1002141-1000573 (Counterclockwise)
Preceding gene: 124266139
Following gene: 124266137
Centisome position: 24.78
GC content: 67.05
Gene sequence:
>1569_bases ATGAAGACATTCGATTTCAACGACGACGCGGTGGTCGTCATCATCGGCTCCGGCGCCGGCGGCGGCACGCTCGCCAACGA GCTCTGCCAGAAGGGCATCAAGGTCGTCGTGCTCGAAGCCGGCGCCGTGCAGTCCAACGCCAGCTTCATCAACGACGAGT GGAAGTCCTTCGGCCAGCTCGCCTGGCTGGACAAGCGCACCACCTCGGGCAGCTGGCGCGTTGCCAAGGACTTCCCCAAC CTGCCGGCCTGGATCTGCAAGACGGTGGGCGGCACCACCACCCACTGGGCCGGCGCCTCGCTGCGCTTCCAGGAGCACGA GTTCAAGACCCGCACCACCTACGGCAACGTGGCCGGCGCGAACTTGCAGGACTGGCCGCTGACGCTGGCCGAGCTCGCAC CCTACTACACGCGCGCCGAGGACAAGATGGGCGTGACGCGGACCCACGGCATCCCCGGCCTGCCCGGCAACAACAACTTC AAGGTGATGTACAGCGGGGCCACCAAGCTCGGCTACAAGGAAGTGCACACCGGCAACATGGCGATCAACAGCCAGCCGCG CGACGACCGCGCACGTTGCCTGCAGCTGGGCTTCTGCTTCCAGGGCTGCAAGAGCGGCGCGAAGTGGAGCACGCTCTACA CCGAGCTGCCCAAGGCCGAGGCCACCGGCAACTTCGAGCTGCGCCCCGAGAGCCACGTGACGCGCATCGAGCACGACGCC AAGGGCAAGGTGACCGGCGTCGTCTACTTCGACAAGGACGGCAAGGAACAGCGCCAGAAGGCCCGCATCGTGGCGGTGGC CGGCAACTCGATCGAGACGCCGCGCCTGCTGCTGCTGTCGGCCTCGAAGATGTTCAAGGACGGCCTGGCGAACAGCTCGG GCCAGGTGGGCCGCAACTACATGCGCCACGTGACCGGCTCGGTGTACGGGCTGTTCGAGAACCCCGTCCACATGTACCGC GGCACCACGATGGCCGGCATCGTGCGCGACGAAGCGCACAACAACACGAAGCGCGGCTTCGTCGGCGGCTACGAGTTGGA GACGCTGTCGCTGGGCCTGCCCTTCATGGCCGCGTTCCTGAACCCGGGCGGCTGGGGTGCCGACTTCTCCGAGTACCTGG AGAACTACACGCAGCTGGCCGGCATGTGGATCGTCGGCGAGGACATGCCGCGCGAGACCAACCGCGTCACGCTGCACAGG ACGCTGAAGGACAAGTGGGGCAGCGCGATCCCCAACGTGCACTTCGACGACCACGAGAACGACCTGAAGCTGCGCGAGCA CGCCTTCACCCAGGGCCAGCGCGTCTACGAGGCGGCCGGTGCCCGCAAGTCCTTCCGCACGCCGCCCTACCCGTCGACGC ACAACCTCGGCACCTGCCGCATGGGCGCCTCGGCCAAGAGCAGCGTCTGCAACTCGTACGGGCAGACGCACGACATCGCG AACCTGTTCATCTCGGACGGCAGCCAGTTCACCACCGGCGGCGCGGAGAACCCGACGCTGACGATCGTGACGCTCGCGAT CCGGCAGGCCGAGTACATCGCCCAGCAGATGAGCGCCCGGGCGATCTGA
Upstream 100 bases:
>100_bases CTGGCTGCCGGCGCCGCCCACCGAGGCGAGCCCGCCGCCCTACATGGGCTGAGCCCCTTCGTCGCCCCGACAACCCAGCT AACGCGAGGCTAGTACCCCC
Downstream 100 bases:
>100_bases GCCCAGGTCGCGCGGGGCGGCACGCCGGGAGGAGCCGGCGTGCCGCCCTCCCGAGCGGTCCGGGCCCGACCCCCGGACCT CCCAAGAACGGTGCCTGACG
Product: putative 2-keto-gluconate dehydrogenase
Products: NA
Alternate protein names: GA 2-DH dehydrogenase subunit; GADH dehydrogenase subunit [H]
Number of amino acids: Translated: 522; Mature: 522
Protein sequence:
>522_residues MKTFDFNDDAVVVIIGSGAGGGTLANELCQKGIKVVVLEAGAVQSNASFINDEWKSFGQLAWLDKRTTSGSWRVAKDFPN LPAWICKTVGGTTTHWAGASLRFQEHEFKTRTTYGNVAGANLQDWPLTLAELAPYYTRAEDKMGVTRTHGIPGLPGNNNF KVMYSGATKLGYKEVHTGNMAINSQPRDDRARCLQLGFCFQGCKSGAKWSTLYTELPKAEATGNFELRPESHVTRIEHDA KGKVTGVVYFDKDGKEQRQKARIVAVAGNSIETPRLLLLSASKMFKDGLANSSGQVGRNYMRHVTGSVYGLFENPVHMYR GTTMAGIVRDEAHNNTKRGFVGGYELETLSLGLPFMAAFLNPGGWGADFSEYLENYTQLAGMWIVGEDMPRETNRVTLHR TLKDKWGSAIPNVHFDDHENDLKLREHAFTQGQRVYEAAGARKSFRTPPYPSTHNLGTCRMGASAKSSVCNSYGQTHDIA NLFISDGSQFTTGGAENPTLTIVTLAIRQAEYIAQQMSARAI
Sequences:
>Translated_522_residues MKTFDFNDDAVVVIIGSGAGGGTLANELCQKGIKVVVLEAGAVQSNASFINDEWKSFGQLAWLDKRTTSGSWRVAKDFPN LPAWICKTVGGTTTHWAGASLRFQEHEFKTRTTYGNVAGANLQDWPLTLAELAPYYTRAEDKMGVTRTHGIPGLPGNNNF KVMYSGATKLGYKEVHTGNMAINSQPRDDRARCLQLGFCFQGCKSGAKWSTLYTELPKAEATGNFELRPESHVTRIEHDA KGKVTGVVYFDKDGKEQRQKARIVAVAGNSIETPRLLLLSASKMFKDGLANSSGQVGRNYMRHVTGSVYGLFENPVHMYR GTTMAGIVRDEAHNNTKRGFVGGYELETLSLGLPFMAAFLNPGGWGADFSEYLENYTQLAGMWIVGEDMPRETNRVTLHR TLKDKWGSAIPNVHFDDHENDLKLREHAFTQGQRVYEAAGARKSFRTPPYPSTHNLGTCRMGASAKSSVCNSYGQTHDIA NLFISDGSQFTTGGAENPTLTIVTLAIRQAEYIAQQMSARAI >Mature_522_residues MKTFDFNDDAVVVIIGSGAGGGTLANELCQKGIKVVVLEAGAVQSNASFINDEWKSFGQLAWLDKRTTSGSWRVAKDFPN LPAWICKTVGGTTTHWAGASLRFQEHEFKTRTTYGNVAGANLQDWPLTLAELAPYYTRAEDKMGVTRTHGIPGLPGNNNF KVMYSGATKLGYKEVHTGNMAINSQPRDDRARCLQLGFCFQGCKSGAKWSTLYTELPKAEATGNFELRPESHVTRIEHDA KGKVTGVVYFDKDGKEQRQKARIVAVAGNSIETPRLLLLSASKMFKDGLANSSGQVGRNYMRHVTGSVYGLFENPVHMYR GTTMAGIVRDEAHNNTKRGFVGGYELETLSLGLPFMAAFLNPGGWGADFSEYLENYTQLAGMWIVGEDMPRETNRVTLHR TLKDKWGSAIPNVHFDDHENDLKLREHAFTQGQRVYEAAGARKSFRTPPYPSTHNLGTCRMGASAKSSVCNSYGQTHDIA NLFISDGSQFTTGGAENPTLTIVTLAIRQAEYIAQQMSARAI
Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate. This subunit functions as the dehydrogenase [H]
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GMC oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000172 - InterPro: IPR007867 [H]
Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]
EC number: =1.1.99.3 [H]
Molecular weight: Translated: 57367; Mature: 57367
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTFDFNDDAVVVIIGSGAGGGTLANELCQKGIKVVVLEAGAVQSNASFINDEWKSFGQL CCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCE AWLDKRTTSGSWRVAKDFPNLPAWICKTVGGTTTHWAGASLRFQEHEFKTRTTYGNVAGA EEEECCCCCCCEEECCCCCCCHHHHHHHCCCCCEECCCCEEEEEHHHCEEECCCCCCCCC NLQDWPLTLAELAPYYTRAEDKMGVTRTHGIPGLPGNNNFKVMYSGATKLGYKEVHTGNM CCCCCCCCHHHHCCHHHCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEECCCE AINSQPRDDRARCLQLGFCFQGCKSGAKWSTLYTELPKAEATGNFELRPESHVTRIEHDA EECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCHHHHHHHCCCC KGKVTGVVYFDKDGKEQRQKARIVAVAGNSIETPRLLLLSASKMFKDGLANSSGQVGRNY CCCEEEEEEECCCCHHHHHHEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHH MRHVTGSVYGLFENPVHMYRGTTMAGIVRDEAHNNTKRGFVGGYELETLSLGLPFMAAFL HHHHHCCEEEEECCCCHHHCCCCCEEEEEHHCCCCCCCCCCCCEEEEEEECCHHHHHHHC NPGGWGADFSEYLENYTQLAGMWIVGEDMPRETNRVTLHRTLKDKWGSAIPNVHFDDHEN CCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCC DLKLREHAFTQGQRVYEAAGARKSFRTPPYPSTHNLGTCRMGASAKSSVCNSYGQTHDIA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHHH NLFISDGSQFTTGGAENPTLTIVTLAIRQAEYIAQQMSARAI EEEEECCCEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKTFDFNDDAVVVIIGSGAGGGTLANELCQKGIKVVVLEAGAVQSNASFINDEWKSFGQL CCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCE AWLDKRTTSGSWRVAKDFPNLPAWICKTVGGTTTHWAGASLRFQEHEFKTRTTYGNVAGA EEEECCCCCCCEEECCCCCCCHHHHHHHCCCCCEECCCCEEEEEHHHCEEECCCCCCCCC NLQDWPLTLAELAPYYTRAEDKMGVTRTHGIPGLPGNNNFKVMYSGATKLGYKEVHTGNM CCCCCCCCHHHHCCHHHCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEECCCE AINSQPRDDRARCLQLGFCFQGCKSGAKWSTLYTELPKAEATGNFELRPESHVTRIEHDA EECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCHHHHHHHCCCC KGKVTGVVYFDKDGKEQRQKARIVAVAGNSIETPRLLLLSASKMFKDGLANSSGQVGRNY CCCEEEEEEECCCCHHHHHHEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCCCHHHHHH MRHVTGSVYGLFENPVHMYRGTTMAGIVRDEAHNNTKRGFVGGYELETLSLGLPFMAAFL HHHHHCCEEEEECCCCHHHCCCCCEEEEEHHCCCCCCCCCCCCEEEEEEECCHHHHHHHC NPGGWGADFSEYLENYTQLAGMWIVGEDMPRETNRVTLHRTLKDKWGSAIPNVHFDDHEN CCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCC DLKLREHAFTQGQRVYEAAGARKSFRTPPYPSTHNLGTCRMGASAKSSVCNSYGQTHDIA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHHH NLFISDGSQFTTGGAENPTLTIVTLAIRQAEYIAQQMSARAI EEEEECCCEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9352901 [H]