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The map label for this gene is nrfC [H]

Identifier: 124266052

GI number: 124266052

Start: 894232

End: 895020

Strand: Reverse

Name: nrfC [H]

Synonym: Mpe_A0859

Alternate gene names: 124266052

Gene position: 895020-894232 (Counterclockwise)

Preceding gene: 124266053

Following gene: 124266051

Centisome position: 22.13

GC content: 69.46

Gene sequence:

>789_bases
ATGATCCAGTGGCTGAAAGACCTGATGAAGTCCGAGCTCGTCGCCGAGGCCCCGGCCCGGCGGAGCGACACGCCCTCGGC
GCGCCGCGGTGACGGCGACGAACCGCCGGAGACGCTGGCCAAGCAACTGGCGCTGGTGATCGATCTCAACGTCTGCGTCG
GCTGCCACGCCTGCGTCACCGCCTGCAAGCAATGGAACACGTCCGGCTCGGCCGGTCCGCTGGCCGACGAGAATGCCTAC
GCGGCCAGCCCGACCGGCACCTTCTTCAACCGCGTGCAGACCTACGAGGCCGGCGTCTTCCCCGGCACCGACACCGTGCA
CTTCCCCAAGAGCTGCCTGCACTGCGAGGACCCGCCCTGCGTTCCGGTGTGTCCCACCGGCGCGAGCTACAAGCGCAAGG
AAGACGGCATCGTGCTGGTCGACTACGACAAGTGCATCGGGTGCAAGTACTGCTCCTGGGCCTGCCCCTACGGCGCACGC
GAGCTCGACGAGGAACGGCAGGTGATGACCAAGTGCACGCTGTGCGTGGACCGCATCTACGACGAGCGGTTGCCGAAGGC
CGATCGCCGGCCGGCGTGCGTGATGGCCTGCCCGACCGGTGCGCGCCTGTTCGGTGACGTGAAGGACCCGGACTCCGATG
TGTCCAGGGCGATCCGCGAACGCGGTGGCTACGCGCTGATGCCGGAGTGGGAAACGCAGCCGGCCAACCAGTACCTGCCG
CGCCGCATCACCGAGGTGGCCGGGCAGCGGCCCGACGGCGCGCCCGGACCCGCCGGCACGGCGCATTGA

Upstream 100 bases:

>100_bases
CCGCGGAGACCTTCCCGCAGGTGAAGGCGACGCCGGCACCCCCCGGGGTGCGCGGCACGACGTCGCGGGTGCTGACCTAT
TTCGCGGGGCGCAAGACATC

Downstream 100 bases:

>100_bases
GCGGGGGCGACGCATGCACCCCGCGTTCTCGATCGTCTTCTTCACCACGCTGGCCGGCGTCGCGCAGGGCCTGGTGGTGG
CGCTCGCCTTGGCGGTGCTG

Product: iron-sulfur cluster protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIQWLKDLMKSELVAEAPARRSDTPSARRGDGDEPPETLAKQLALVIDLNVCVGCHACVTACKQWNTSGSAGPLADENAY
AASPTGTFFNRVQTYEAGVFPGTDTVHFPKSCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCSWACPYGAR
ELDEERQVMTKCTLCVDRIYDERLPKADRRPACVMACPTGARLFGDVKDPDSDVSRAIRERGGYALMPEWETQPANQYLP
RRITEVAGQRPDGAPGPAGTAH

Sequences:

>Translated_262_residues
MIQWLKDLMKSELVAEAPARRSDTPSARRGDGDEPPETLAKQLALVIDLNVCVGCHACVTACKQWNTSGSAGPLADENAY
AASPTGTFFNRVQTYEAGVFPGTDTVHFPKSCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCSWACPYGAR
ELDEERQVMTKCTLCVDRIYDERLPKADRRPACVMACPTGARLFGDVKDPDSDVSRAIRERGGYALMPEWETQPANQYLP
RRITEVAGQRPDGAPGPAGTAH
>Mature_262_residues
MIQWLKDLMKSELVAEAPARRSDTPSARRGDGDEPPETLAKQLALVIDLNVCVGCHACVTACKQWNTSGSAGPLADENAY
AASPTGTFFNRVQTYEAGVFPGTDTVHFPKSCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCSWACPYGAR
ELDEERQVMTKCTLCVDRIYDERLPKADRRPACVMACPTGARLFGDVKDPDSDVSRAIRERGGYALMPEWETQPANQYLP
RRITEVAGQRPDGAPGPAGTAH

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=207, Percent_Identity=34.7826086956522, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787749, Length=205, Percent_Identity=32.1951219512195, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787122, Length=171, Percent_Identity=38.0116959064327, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787872, Length=171, Percent_Identity=37.4269005847953, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790326, Length=188, Percent_Identity=32.9787234042553, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI226510944, Length=170, Percent_Identity=37.0588235294118, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1789370, Length=235, Percent_Identity=31.4893617021277, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787740, Length=91, Percent_Identity=42.8571428571429, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787478, Length=91, Percent_Identity=41.7582417582418, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787963, Length=207, Percent_Identity=28.0193236714976, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789067, Length=178, Percent_Identity=34.8314606741573, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367245, Length=166, Percent_Identity=32.5301204819277, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082180, Length=175, Percent_Identity=31.4285714285714, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788811, Length=197, Percent_Identity=29.9492385786802, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082179, Length=161, Percent_Identity=29.8136645962733, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28619; Mature: 28619

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
6.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQWLKDLMKSELVAEAPARRSDTPSARRGDGDEPPETLAKQLALVIDLNVCVGCHACVT
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ACKQWNTSGSAGPLADENAYAASPTGTFFNRVQTYEAGVFPGTDTVHFPKSCLHCEDPPC
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC
VPVCPTGASYKRKEDGIVLVDYDKCIGCKYCSWACPYGARELDEERQVMTKCTLCVDRIY
CEECCCCCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DERLPKADRRPACVMACPTGARLFGDVKDPDSDVSRAIRERGGYALMPEWETQPANQYLP
HHHCCCCCCCCEEEEECCCCHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHH
RRITEVAGQRPDGAPGPAGTAH
HHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIQWLKDLMKSELVAEAPARRSDTPSARRGDGDEPPETLAKQLALVIDLNVCVGCHACVT
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ACKQWNTSGSAGPLADENAYAASPTGTFFNRVQTYEAGVFPGTDTVHFPKSCLHCEDPPC
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCC
VPVCPTGASYKRKEDGIVLVDYDKCIGCKYCSWACPYGARELDEERQVMTKCTLCVDRIY
CEECCCCCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DERLPKADRRPACVMACPTGARLFGDVKDPDSDVSRAIRERGGYALMPEWETQPANQYLP
HHHCCCCCCCCEEEEECCCCHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHH
RRITEVAGQRPDGAPGPAGTAH
HHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]