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The map label for this gene is ydaM [H]

Identifier: 124265895

GI number: 124265895

Start: 732364

End: 733449

Strand: Direct

Name: ydaM [H]

Synonym: Mpe_A0702

Alternate gene names: 124265895

Gene position: 732364-733449 (Clockwise)

Preceding gene: 124265894

Following gene: 124265896

Centisome position: 18.11

GC content: 71.18

Gene sequence:

>1086_bases
ATGACAGACCTGCTCGGATCCGTCGTCAGCCTCACCGGCTACCGTGACCGCGACCTGCTCGACGCAGCCGCGGTCACGAT
GCTGGCCGACTGGCTGCGACCGCTGAGCCTGAGCCTGTACCGCTGTGTGGGCGAGGCCGGCGATACGCGGCTGCTGCTGC
AGGCGTGCGCCCGCGACGGCCCGCCGGCGGTGGCGGGCGATCCGCCGTGGACCCCGCTGGAGGCGCTGCCGTCGCTGGAC
GACTGGCTACCGCACCGCGACGCGCTGGCCGGCGGCGAACCGCTGCTGGCGCTGCCCACCAGCCGACCCGGCCCGCGAGG
CCGGCCGGTGCTGCTGAATGTGTTCCCGCTGTGGGTCGGCACCGAACGCTTCGGTCTGGTCGAGGTGCTCGCCGAGAAGC
CGCTCGACGCCGAACAGCTGCGCTTCGTCGATGCCGTGCTGAAGATCTACCGCAACCAGGTCGGCCTGCTCGACTACAGC
GAACGCGACACGCTGACCGGTCTGCTGAACCGCAAGACCTTCGACGAACAGTTCGGCAAGTGCCTGCTCGAGTGCGACGG
CCCGGGGCCGCTGGCGCCGCTGTCGCCGTCGGCCGACGGCGGGCAGCAGCCCGAACGGCGCGCCCGCGCGTCGCTGCGCT
ACTGGATCGGCGTGGTCGACGTCGACCACTTCAAGCGCGTGAACGACAACTTCGGTCACCTGATCGGCGACGAGGTGCTG
CTGCTGATGGCGCGCATCCTGCGCGGCGCCTTCCGGCATGGCGACCGCCTCTACCGCTTCGGCGGCGAGGAGTTCGTCGT
GATGCTGCACGCCGATTCGCGCGTGCACGCGGCGCTCGCCTTCGAGCGCTTCCGCGCGCGCATGGAGACCTGCCGCTTCC
CGCAGGTCGGCAGCGTCACGGTCAGCATCGGCATGACCGAACTGCGCGCCGACGACACCCCCAGCGCGGCCTTCTCGCGC
GCCGACCTGGCGGTCTACCACGCCAAGCAGAACGGCCGCAACCAGCTGCAGTGCCACGACCAGCTGGTCGAGGGGGGCAC
GCTGGTCGAGGCGGGCGGCAAGGTCGGCGAGATCGAGCTGTTCTGA

Upstream 100 bases:

>100_bases
CCCCGCGCCGCCGGGGCGTGCATACTGCGCGCGCCCGGCGCGGCGGTTCTCAAGCGTGCGGCGGGCAGGCCGATAGCCGA
TCAAGCCCTATCCACACGCC

Downstream 100 bases:

>100_bases
CGCCGGTACCACGCCGGCACGGCAGCGCTTCGCTGCGGTAAGCGAAAACCTGCGGGCCAGCAACCCCCCTGAACGACAGA
CGGGACAGTCACGCCCGACT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTDLLGSVVSLTGYRDRDLLDAAAVTMLADWLRPLSLSLYRCVGEAGDTRLLLQACARDGPPAVAGDPPWTPLEALPSLD
DWLPHRDALAGGEPLLALPTSRPGPRGRPVLLNVFPLWVGTERFGLVEVLAEKPLDAEQLRFVDAVLKIYRNQVGLLDYS
ERDTLTGLLNRKTFDEQFGKCLLECDGPGPLAPLSPSADGGQQPERRARASLRYWIGVVDVDHFKRVNDNFGHLIGDEVL
LLMARILRGAFRHGDRLYRFGGEEFVVMLHADSRVHAALAFERFRARMETCRFPQVGSVTVSIGMTELRADDTPSAAFSR
ADLAVYHAKQNGRNQLQCHDQLVEGGTLVEAGGKVGEIELF

Sequences:

>Translated_361_residues
MTDLLGSVVSLTGYRDRDLLDAAAVTMLADWLRPLSLSLYRCVGEAGDTRLLLQACARDGPPAVAGDPPWTPLEALPSLD
DWLPHRDALAGGEPLLALPTSRPGPRGRPVLLNVFPLWVGTERFGLVEVLAEKPLDAEQLRFVDAVLKIYRNQVGLLDYS
ERDTLTGLLNRKTFDEQFGKCLLECDGPGPLAPLSPSADGGQQPERRARASLRYWIGVVDVDHFKRVNDNFGHLIGDEVL
LLMARILRGAFRHGDRLYRFGGEEFVVMLHADSRVHAALAFERFRARMETCRFPQVGSVTVSIGMTELRADDTPSAAFSR
ADLAVYHAKQNGRNQLQCHDQLVEGGTLVEAGGKVGEIELF
>Mature_360_residues
TDLLGSVVSLTGYRDRDLLDAAAVTMLADWLRPLSLSLYRCVGEAGDTRLLLQACARDGPPAVAGDPPWTPLEALPSLDD
WLPHRDALAGGEPLLALPTSRPGPRGRPVLLNVFPLWVGTERFGLVEVLAEKPLDAEQLRFVDAVLKIYRNQVGLLDYSE
RDTLTGLLNRKTFDEQFGKCLLECDGPGPLAPLSPSADGGQQPERRARASLRYWIGVVDVDHFKRVNDNFGHLIGDEVLL
LMARILRGAFRHGDRLYRFGGEEFVVMLHADSRVHAALAFERFRARMETCRFPQVGSVTVSIGMTELRADDTPSAAFSRA
DLAVYHAKQNGRNQLQCHDQLVEGGTLVEAGGKVGEIELF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=238, Percent_Identity=30.672268907563, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=30.2197802197802, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787262, Length=192, Percent_Identity=32.8125, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=191, Percent_Identity=32.4607329842932, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=195, Percent_Identity=27.6923076923077, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=178, Percent_Identity=29.2134831460674, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=32.843137254902, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=128, Percent_Identity=33.59375, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788381, Length=196, Percent_Identity=29.0816326530612, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081974, Length=169, Percent_Identity=27.810650887574, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787541, Length=131, Percent_Identity=35.1145038167939, Blast_Score=61, Evalue=9e-11,
Organism=Escherichia coli, GI1788085, Length=133, Percent_Identity=31.5789473684211, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 39764; Mature: 39633

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00092 N6_MTASE ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLLGSVVSLTGYRDRDLLDAAAVTMLADWLRPLSLSLYRCVGEAGDTRLLLQACARDG
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
PPAVAGDPPWTPLEALPSLDDWLPHRDALAGGEPLLALPTSRPGPRGRPVLLNVFPLWVG
CCCCCCCCCCCHHHHCCCCHHHCCCHHHCCCCCCEEECCCCCCCCCCCEEEEEEEEEEEC
TERFGLVEVLAEKPLDAEQLRFVDAVLKIYRNQVGLLDYSERDTLTGLLNRKTFDEQFGK
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHCC
CLLECDGPGPLAPLSPSADGGQQPERRARASLRYWIGVVDVDHFKRVNDNFGHLIGDEVL
EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEHHHHHHHCCCHHHHHHHHHH
LLMARILRGAFRHGDRLYRFGGEEFVVMLHADSRVHAALAFERFRARMETCRFPQVGSVT
HHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
VSIGMTELRADDTPSAAFSRADLAVYHAKQNGRNQLQCHDQLVEGGTLVEAGGKVGEIEL
EEECHHHHCCCCCCHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCEEEEEE
F
C
>Mature Secondary Structure 
TDLLGSVVSLTGYRDRDLLDAAAVTMLADWLRPLSLSLYRCVGEAGDTRLLLQACARDG
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
PPAVAGDPPWTPLEALPSLDDWLPHRDALAGGEPLLALPTSRPGPRGRPVLLNVFPLWVG
CCCCCCCCCCCHHHHCCCCHHHCCCHHHCCCCCCEEECCCCCCCCCCCEEEEEEEEEEEC
TERFGLVEVLAEKPLDAEQLRFVDAVLKIYRNQVGLLDYSERDTLTGLLNRKTFDEQFGK
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHCC
CLLECDGPGPLAPLSPSADGGQQPERRARASLRYWIGVVDVDHFKRVNDNFGHLIGDEVL
EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEHHHHHHHCCCHHHHHHHHHH
LLMARILRGAFRHGDRLYRFGGEEFVVMLHADSRVHAALAFERFRARMETCRFPQVGSVT
HHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
VSIGMTELRADDTPSAAFSRADLAVYHAKQNGRNQLQCHDQLVEGGTLVEAGGKVGEIEL
EEECHHHHCCCCCCHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCEEEEEE
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]