| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is ubiX [C]
Identifier: 124265712
GI number: 124265712
Start: 557569
End: 558132
Strand: Reverse
Name: ubiX [C]
Synonym: Mpe_A0519
Alternate gene names: 124265712
Gene position: 558132-557569 (Counterclockwise)
Preceding gene: 124265713
Following gene: 124265709
Centisome position: 13.8
GC content: 69.15
Gene sequence:
>564_bases ATGACCCGACGCCTCGTGGTCGGCATCACCGGAGCGACCGGCGCGGTCTACGGCACACGCTTGTTGGCACGCGCTCGCGC GCTGGGCGCCGAGACGCACCTCGTCGTGACGCCGGCCGGCGTGCTGAACGTGCATCACGAACTCGGCCTGGACCGGCAGG CGCTGGAAGCGCTGGCCGATCACGCGCATGCGCCCGGTGACATTGGCGCCTGCATCGCCAGCGGCAGCTTCGCGACCGCG GCCATGGTCATCGCGCCGTGTTCGATGAAGTCGCTGGCCGCCATTGCGCATGGCTTCGGCGACAACCTGCTGACGCGCGC TGCCGACGTGACGCTGAAGGAGCGACGCCGGCTGCTGCTGCTGGTGCGCGAAACACCGTTCAACCTGGCACATCTGCGCA ACATGACCGCGGTGACCGAGATGGGCGGCATTGTGTTCCCACCGTTGCCGGCCTTCTACCACCGGCCAGCGAGCATCGAC GAGCTGGTCGACGACACGGTGGAACGAGTGCTCGGCCTGCTGGGGCTCGACGCCGCGACGCCCAGGGCGTGGTCGGGTCT CTGA
Upstream 100 bases:
>100_bases CTGTTGAGCACCCAGGCCTGAGGCCCCGCTCCGCACGGCCACCGTCCTGGCCGCCGTCGTCCTGCCTCGCAGGACGACCC TTCACCTGAAGGTACAGCAC
Downstream 100 bases:
>100_bases GGTTCGGAGCCGCTCAGCCGGGCTTGTATTCCCACCGCTTGCGCGCGGCGAACACGGCGTTCGGATACTCGGGGCGGCCG CGACTGCCGTTGTAGCGGCC
Product: putative flavoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MTRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALADHAHAPGDIGACIASGSFATA AMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLLLVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASID ELVDDTVERVLGLLGLDAATPRAWSGL
Sequences:
>Translated_187_residues MTRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALADHAHAPGDIGACIASGSFATA AMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLLLVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASID ELVDDTVERVLGLLGLDAATPRAWSGL >Mature_186_residues TRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALADHAHAPGDIGACIASGSFATAA MVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLLLVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASIDE LVDDTVERVLGLLGLDAATPRAWSGL
Specific function: Unknown
COG id: COG0163
COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polyprenyl p-hydroxybenzoate / phenylacrylic acid decarboxylases family [H]
Homologues:
Organism=Escherichia coli, GI1788650, Length=170, Percent_Identity=53.5294117647059, Blast_Score=183, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6320746, Length=185, Percent_Identity=47.027027027027, Blast_Score=180, Evalue=1e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003382 - InterPro: IPR004507 [H]
Pfam domain/function: PF02441 Flavoprotein [H]
EC number: 4.1.1.-
Molecular weight: Translated: 19727; Mature: 19596
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALAD CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHH HAHAPGDIGACIASGSFATAAMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLL HCCCCCCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHCCEEEE LVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASIDELVDDTVERVLGLLGLDAAT EEECCCCCHHHHHHHHHHHHCCCEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC PRAWSGL CCCCCCC >Mature Secondary Structure TRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALAD CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHH HAHAPGDIGACIASGSFATAAMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLL HCCCCCCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHCCEEEE LVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASIDELVDDTVERVLGLLGLDAAT EEECCCCCHHHHHHHHHHHHCCCEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC PRAWSGL CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Carbon-Carbon Lyases; Carboxy-Lyases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]