Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is ubiX [C]

Identifier: 124265712

GI number: 124265712

Start: 557569

End: 558132

Strand: Reverse

Name: ubiX [C]

Synonym: Mpe_A0519

Alternate gene names: 124265712

Gene position: 558132-557569 (Counterclockwise)

Preceding gene: 124265713

Following gene: 124265709

Centisome position: 13.8

GC content: 69.15

Gene sequence:

>564_bases
ATGACCCGACGCCTCGTGGTCGGCATCACCGGAGCGACCGGCGCGGTCTACGGCACACGCTTGTTGGCACGCGCTCGCGC
GCTGGGCGCCGAGACGCACCTCGTCGTGACGCCGGCCGGCGTGCTGAACGTGCATCACGAACTCGGCCTGGACCGGCAGG
CGCTGGAAGCGCTGGCCGATCACGCGCATGCGCCCGGTGACATTGGCGCCTGCATCGCCAGCGGCAGCTTCGCGACCGCG
GCCATGGTCATCGCGCCGTGTTCGATGAAGTCGCTGGCCGCCATTGCGCATGGCTTCGGCGACAACCTGCTGACGCGCGC
TGCCGACGTGACGCTGAAGGAGCGACGCCGGCTGCTGCTGCTGGTGCGCGAAACACCGTTCAACCTGGCACATCTGCGCA
ACATGACCGCGGTGACCGAGATGGGCGGCATTGTGTTCCCACCGTTGCCGGCCTTCTACCACCGGCCAGCGAGCATCGAC
GAGCTGGTCGACGACACGGTGGAACGAGTGCTCGGCCTGCTGGGGCTCGACGCCGCGACGCCCAGGGCGTGGTCGGGTCT
CTGA

Upstream 100 bases:

>100_bases
CTGTTGAGCACCCAGGCCTGAGGCCCCGCTCCGCACGGCCACCGTCCTGGCCGCCGTCGTCCTGCCTCGCAGGACGACCC
TTCACCTGAAGGTACAGCAC

Downstream 100 bases:

>100_bases
GGTTCGGAGCCGCTCAGCCGGGCTTGTATTCCCACCGCTTGCGCGCGGCGAACACGGCGTTCGGATACTCGGGGCGGCCG
CGACTGCCGTTGTAGCGGCC

Product: putative flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALADHAHAPGDIGACIASGSFATA
AMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLLLVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASID
ELVDDTVERVLGLLGLDAATPRAWSGL

Sequences:

>Translated_187_residues
MTRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALADHAHAPGDIGACIASGSFATA
AMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLLLVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASID
ELVDDTVERVLGLLGLDAATPRAWSGL
>Mature_186_residues
TRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALADHAHAPGDIGACIASGSFATAA
MVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLLLVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASIDE
LVDDTVERVLGLLGLDAATPRAWSGL

Specific function: Unknown

COG id: COG0163

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polyprenyl p-hydroxybenzoate / phenylacrylic acid decarboxylases family [H]

Homologues:

Organism=Escherichia coli, GI1788650, Length=170, Percent_Identity=53.5294117647059, Blast_Score=183, Evalue=8e-48,
Organism=Saccharomyces cerevisiae, GI6320746, Length=185, Percent_Identity=47.027027027027, Blast_Score=180, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003382
- InterPro:   IPR004507 [H]

Pfam domain/function: PF02441 Flavoprotein [H]

EC number: 4.1.1.-

Molecular weight: Translated: 19727; Mature: 19596

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALAD
CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHH
HAHAPGDIGACIASGSFATAAMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLL
HCCCCCCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHCCEEEE
LVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASIDELVDDTVERVLGLLGLDAAT
EEECCCCCHHHHHHHHHHHHCCCEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
PRAWSGL
CCCCCCC
>Mature Secondary Structure 
TRRLVVGITGATGAVYGTRLLARARALGAETHLVVTPAGVLNVHHELGLDRQALEALAD
CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHH
HAHAPGDIGACIASGSFATAAMVIAPCSMKSLAAIAHGFGDNLLTRAADVTLKERRRLLL
HCCCCCCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHCCEEEE
LVRETPFNLAHLRNMTAVTEMGGIVFPPLPAFYHRPASIDELVDDTVERVLGLLGLDAAT
EEECCCCCHHHHHHHHHHHHCCCEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
PRAWSGL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Carbon-Carbon Lyases; Carboxy-Lyases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]