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The map label for this gene is cmpR [H]

Identifier: 124265331

GI number: 124265331

Start: 143390

End: 144370

Strand: Reverse

Name: cmpR [H]

Synonym: Mpe_A0138

Alternate gene names: 124265331

Gene position: 144370-143390 (Counterclockwise)

Preceding gene: 124265337

Following gene: 124265327

Centisome position: 3.57

GC content: 66.97

Gene sequence:

>981_bases
ATGATCCAATCGACCCAACCGCCCGGCCTTGAACGCGTTCCGCGTGCAAGCCTTGTGCAACTGCGCAGCTTTGAGGCCGC
GGTCCGGCTGGGTGGCGTCGGGCGCGCGGCGCGTGCGCTGCACCTCGCACAGCCCACGGTATCGACGCAGCTCAAGGAGC
TCGCTTCCGCGTTGGGCCTCGTACTCTTCGAACCCGAGGGTCGCGGTTTGGCGCCCACAGCAGTGGGACGACGCCTGGCC
GAGGCAGTGCGTACGATGGGCGCGGCTTGGCAAAGCTTCGAGGAGGATGCTGCAGCGCTCCAGGGGCTGAGGCGAGGCCG
GCTGCGGATTGCGGCCGTCACCACGACCGAATACTTCCTTCCGGATCTGCTGGGCCCATTTGCGCGTCAGTACCCGGGCA
TCGAAATCGAGCTGGCGGTCGAGAACCGCAACGCCGTCGTCGCACGACTCGAGCGCGGCGACGACGAATTGGCGGCGATG
ATGCTTCCGCCCTCGCACCTGCCGCTGGCGCTCTGGCCGTTCCTCGAGAACCCGCTCGTCATCATCGCGCCGGCCGGGCA
TGCGCTGACCCGCCGACGCCGCATGAAGCTGGCTGAGTTGGCCGCCGAGCCCCTGCTTGCACGCGAGGTAGGCTCTGGCA
CACGTGCGGCTGCCGAACAGGCCTTTGCTGCCCAAGGCATTGATTGGCCACCACGCATGGCGCTTGGCAGCAACGAGGCC
ATCAAGCACGCAGTGCGTGCTGGCCTTGGTGTGGCCGTGTTGTCACGTCACACCCTTGCACCGGACCCTATGACTGAGGG
CCTTGCGGTGCTCTCTGTCGCGGGATTCCCACTGCGCCGCCAGTGGCACCTTGTGTGGCGAAAAGACCGGGCGTTGTCAC
TACCGGCGCGTACGCTGCTTGACGACTTGCGGGCTCGCCTGCAAGTGAAGATGCAGCCCATGGGTTGGGTGGCGCCTGGG
GCGAGTTCGCCGCCCACTTGA

Upstream 100 bases:

>100_bases
TCGCGGGGTCGAGAAAGTTTTGCATGACGGAGCGTGATGCTCGGGCCGTTCAATTGCCTCAACAAGTGATATGTTCTGAT
ACAAAACATCGACTTCTCCA

Downstream 100 bases:

>100_bases
GACCCGTCGCGGGTACTCGCGAACATGGAAATGCGGTGACCGCTGCACAGCAGAAACCCATTCGAGATTCGGCAGCGGCA
ACGCCCGGCCAGAAGCTCGC

Product: ndhF3 operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MIQSTQPPGLERVPRASLVQLRSFEAAVRLGGVGRAARALHLAQPTVSTQLKELASALGLVLFEPEGRGLAPTAVGRRLA
EAVRTMGAAWQSFEEDAAALQGLRRGRLRIAAVTTTEYFLPDLLGPFARQYPGIEIELAVENRNAVVARLERGDDELAAM
MLPPSHLPLALWPFLENPLVIIAPAGHALTRRRRMKLAELAAEPLLAREVGSGTRAAAEQAFAAQGIDWPPRMALGSNEA
IKHAVRAGLGVAVLSRHTLAPDPMTEGLAVLSVAGFPLRRQWHLVWRKDRALSLPARTLLDDLRARLQVKMQPMGWVAPG
ASSPPT

Sequences:

>Translated_326_residues
MIQSTQPPGLERVPRASLVQLRSFEAAVRLGGVGRAARALHLAQPTVSTQLKELASALGLVLFEPEGRGLAPTAVGRRLA
EAVRTMGAAWQSFEEDAAALQGLRRGRLRIAAVTTTEYFLPDLLGPFARQYPGIEIELAVENRNAVVARLERGDDELAAM
MLPPSHLPLALWPFLENPLVIIAPAGHALTRRRRMKLAELAAEPLLAREVGSGTRAAAEQAFAAQGIDWPPRMALGSNEA
IKHAVRAGLGVAVLSRHTLAPDPMTEGLAVLSVAGFPLRRQWHLVWRKDRALSLPARTLLDDLRARLQVKMQPMGWVAPG
ASSPPT
>Mature_326_residues
MIQSTQPPGLERVPRASLVQLRSFEAAVRLGGVGRAARALHLAQPTVSTQLKELASALGLVLFEPEGRGLAPTAVGRRLA
EAVRTMGAAWQSFEEDAAALQGLRRGRLRIAAVTTTEYFLPDLLGPFARQYPGIEIELAVENRNAVVARLERGDDELAAM
MLPPSHLPLALWPFLENPLVIIAPAGHALTRRRRMKLAELAAEPLLAREVGSGTRAAAEQAFAAQGIDWPPRMALGSNEA
IKHAVRAGLGVAVLSRHTLAPDPMTEGLAVLSVAGFPLRRQWHLVWRKDRALSLPARTLLDDLRARLQVKMQPMGWVAPG
ASSPPT

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=32.7645051194539, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1790399, Length=275, Percent_Identity=26.1818181818182, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=23.2638888888889, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=26.2068965517241, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=30.0884955752212, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789204, Length=258, Percent_Identity=27.5193798449612, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=265, Percent_Identity=26.0377358490566, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788887, Length=239, Percent_Identity=26.7782426778243, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=28.3400809716599, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35221; Mature: 35221

Theoretical pI: Translated: 11.35; Mature: 11.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSTQPPGLERVPRASLVQLRSFEAAVRLGGVGRAARALHLAQPTVSTQLKELASALGL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCE
VLFEPEGRGLAPTAVGRRLAEAVRTMGAAWQSFEEDAAALQGLRRGRLRIAAVTTTEYFL
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHH
PDLLGPFARQYPGIEIELAVENRNAVVARLERGDDELAAMMLPPSHLPLALWPFLENPLV
HHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCEEEEHHCCCCEE
IIAPAGHALTRRRRMKLAELAAEPLLAREVGSGTRAAAEQAFAAQGIDWPPRMALGSNEA
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
IKHAVRAGLGVAVLSRHTLAPDPMTEGLAVLSVAGFPLRRQWHLVWRKDRALSLPARTLL
HHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCHHHHH
DDLRARLQVKMQPMGWVAPGASSPPT
HHHHHHHEEEECCCCEECCCCCCCCC
>Mature Secondary Structure
MIQSTQPPGLERVPRASLVQLRSFEAAVRLGGVGRAARALHLAQPTVSTQLKELASALGL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCE
VLFEPEGRGLAPTAVGRRLAEAVRTMGAAWQSFEEDAAALQGLRRGRLRIAAVTTTEYFL
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHH
PDLLGPFARQYPGIEIELAVENRNAVVARLERGDDELAAMMLPPSHLPLALWPFLENPLV
HHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCEEEEHHCCCCEE
IIAPAGHALTRRRRMKLAELAAEPLLAREVGSGTRAAAEQAFAAQGIDWPPRMALGSNEA
EEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
IKHAVRAGLGVAVLSRHTLAPDPMTEGLAVLSVAGFPLRRQWHLVWRKDRALSLPARTLL
HHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCHHHHH
DDLRARLQVKMQPMGWVAPGASSPPT
HHHHHHHEEEECCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA