| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is tag [H]
Identifier: 124265290
GI number: 124265290
Start: 91908
End: 92552
Strand: Reverse
Name: tag [H]
Synonym: Mpe_A0097
Alternate gene names: 124265290
Gene position: 92552-91908 (Counterclockwise)
Preceding gene: 124265291
Following gene: 124265287
Centisome position: 2.29
GC content: 69.77
Gene sequence:
>645_bases ATGAGCCCACCGCTTCCCTCCGGCCTGTTCGACACCGCCACCGATGGCGCGCCACGCTGCACCTGGTGCGCGGCCACGCC GGCCTACCAGCACTACCACGACCACGAATGGGGCTTCCCGGTCACCGACGACCGGCGGCTGTTCGAGAAACTCTGCCTCG AAGGCTTCCAGGCCGGCCTGAGCTGGCTCACCATCCTGAACAAGCGCGAGAATTTCCGCGCCGCGTTCGCCGACTTCGAT GCCGAGCGGCTGTCGCGCTACACCGGGCGCGATGTCGAGCGGCTGCTGGGCGACGCCGGCATCGTGCGCCACCGCGGCAA GATCGAGTCGACTCTCAACAACGCCCGCCGTGTGATCGAGTTGCGCGCCGAGTTTGGTTCGCTGGCGGCCTACGCCTGGC GCCATGAGCCGGCGCCCGCCTCGCGCCCCCGCCGCATGACGCTCGAGACACTGAAGACGCAGACCACCTCGCCCGAGTCG GTGGCGATGAGCAAGGACCTGAAGCGGCGCGGCTGGAGCTTCGTCGGCCCGACCACGGTCTACGCGTTCATGCAGGCGAT GGGGCTGGTCAACGACCACCTCGACGGCTGCCACGTGCGCGAACGAGCGCTGCAGGCGCGGCGCGGACTGCAGCCGCCGC GCTGA
Upstream 100 bases:
>100_bases GAAGACGGCGCGACGGTGGCACTGGCCGTCGCGGTGTGGTTGCACTGAAGATGCGGGGCGGCTCTCCGGCAGGCATGATG CGCGCCGAGGAGTCCACCGC
Downstream 100 bases:
>100_bases CGGCCGGGGCCCGGCCCGCTCAGCCGGGCGGCCGCAGGCGGTGCAGATCGGCCCGCGTGAAGAGCACGTCGCGATCCGAC AACGCCTTGGCCAGCCGCTG
Product: DNA-3-methyladenine glycosylase I
Products: NA
Alternate protein names: 3-methyladenine-DNA glycosylase I, constitutive; TAG I; DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I [H]
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSPPLPSGLFDTATDGAPRCTWCAATPAYQHYHDHEWGFPVTDDRRLFEKLCLEGFQAGLSWLTILNKRENFRAAFADFD AERLSRYTGRDVERLLGDAGIVRHRGKIESTLNNARRVIELRAEFGSLAAYAWRHEPAPASRPRRMTLETLKTQTTSPES VAMSKDLKRRGWSFVGPTTVYAFMQAMGLVNDHLDGCHVRERALQARRGLQPPR
Sequences:
>Translated_214_residues MSPPLPSGLFDTATDGAPRCTWCAATPAYQHYHDHEWGFPVTDDRRLFEKLCLEGFQAGLSWLTILNKRENFRAAFADFD AERLSRYTGRDVERLLGDAGIVRHRGKIESTLNNARRVIELRAEFGSLAAYAWRHEPAPASRPRRMTLETLKTQTTSPES VAMSKDLKRRGWSFVGPTTVYAFMQAMGLVNDHLDGCHVRERALQARRGLQPPR >Mature_213_residues SPPLPSGLFDTATDGAPRCTWCAATPAYQHYHDHEWGFPVTDDRRLFEKLCLEGFQAGLSWLTILNKRENFRAAFADFDA ERLSRYTGRDVERLLGDAGIVRHRGKIESTLNNARRVIELRAEFGSLAAYAWRHEPAPASRPRRMTLETLKTQTTSPESV AMSKDLKRRGWSFVGPTTVYAFMQAMGLVNDHLDGCHVRERALQARRGLQPPR
Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions [H]
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789971, Length=179, Percent_Identity=47.4860335195531, Blast_Score=183, Evalue=7e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005019 - InterPro: IPR011257 - InterPro: IPR004597 [H]
Pfam domain/function: PF03352 Adenine_glyco [H]
EC number: =3.2.2.20 [H]
Molecular weight: Translated: 24287; Mature: 24156
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPLPSGLFDTATDGAPRCTWCAATPAYQHYHDHEWGFPVTDDRRLFEKLCLEGFQAGL CCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH SWLTILNKRENFRAAFADFDAERLSRYTGRDVERLLGDAGIVRHRGKIESTLNNARRVIE HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAEFGSLAAYAWRHEPAPASRPRRMTLETLKTQTTSPESVAMSKDLKRRGWSFVGPTTV HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHH YAFMQAMGLVNDHLDGCHVRERALQARRGLQPPR HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SPPLPSGLFDTATDGAPRCTWCAATPAYQHYHDHEWGFPVTDDRRLFEKLCLEGFQAGL CCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH SWLTILNKRENFRAAFADFDAERLSRYTGRDVERLLGDAGIVRHRGKIESTLNNARRVIE HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAEFGSLAAYAWRHEPAPASRPRRMTLETLKTQTTSPESVAMSKDLKRRGWSFVGPTTV HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHH YAFMQAMGLVNDHLDGCHVRERALQARRGLQPPR HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3536912; 3520491; 8041620; 9278503 [H]