| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is 124265259
Identifier: 124265259
GI number: 124265259
Start: 60884
End: 61687
Strand: Reverse
Name: 124265259
Synonym: Mpe_A0066
Alternate gene names: NA
Gene position: 61687-60884 (Counterclockwise)
Preceding gene: 124265260
Following gene: 124265258
Centisome position: 1.53
GC content: 70.65
Gene sequence:
>804_bases ATGAGCCGCGCCCCCGTGCGCCTGCAGGTGCTCGGCTGCTCCGGCTCCATCGCCTCGGGCAGCCGCACCACTGCCTTCCT GCTCGACGACAACGTGCTGATCGACGCCGGCACCGGCGTGGGCGACCTGGCCCTCGACGCGATGGCCCGCGTGGACGACA TCCTCGTCTCGCATTCCCATCTCGATCATGTGCTGGCCATCCCGCTGCTCGCCGACAGCGTGATGAAGCTGCGGCTGGCG CAGCCCGAACGCGGACCGATCCGCGTGCACGGACTGCCCGAGACGCTGGCGGCGCTGCGCGCCCACCTCTTCAATGGCCA GCTCTGGCCCGACTTCACCAGCATCCCGAGCGCCGCCTACCCGATCATCCGGCTGCTGCCCTTCGCCATTGGCGACACCC TGCGCTTCGGCCGCGGCGATGCCGAGCGGCACGTGGAGGTGCTGCCGGCATCGCACACCGTGCCGGCCTGCGGCTTCGCC GTCGACAGCGAAGAAGGCTGGTGGGTCTACAGCGGCGACACCGGCTCCAACCCGGCGCTGTGGGCGGCGCTGAAGGGCCG CCGCATCGCTCACCTCATCATCGAGACTGCCTTCGGCGACGACGAGCGCTGGCTCGCCGACCTGAGCGGCCACCTCGCGC CCAGCAGCCTGGCCACCGAGCTGGCCCAGCTGGACGGCAGCGTGCCGGTGCACATCACCCATCCCAAGCCCGGCGAGGTG GCGGCAGTGGTGGCGCAGATCCGGGCCATCGACACGGCGCATCGGGTGGAGCCGTTGGTGAAGGGGTTGGTGTTCACCCT TTGA
Upstream 100 bases:
>100_bases GCGCAGCGCTTGCCCGCCGTTCGCCCCGGCGGCACCATCCCTGGGTGACGTTTCCCGTTCTGCCGACCCCTGCCGCCGCT ACCGCGACGGTGGTATCTCC
Downstream 100 bases:
>100_bases GCGCGCTTCGCGATGCGACCAAAAGTGTCGACATCGGATGGCCACGGTTCCTCAAATCAGCGTCCCATGTGACGTGATCT GTCCCAGTTTCACCGCCATG
Product: cAMP phosphodiesterase
Products: NA
Alternate protein names: Cyclic-AMP Phosphodiesterase; Metal Dependent Phosphohydrolase; CAMP Phosphodiesterase; Beta-Lactamase Domain-Containing Protein; 3 5'-Cyclic-Nucleotide Phosphodiesterase; CAMP Phosphodiesterase Class-II; Beta-Lactamase-Like; Camp Phosphodiesterases Class-Ii; Response Regulator; Cyclic-AMP Phosphodiesterase Class-II; CAMP Phosphodiesterase-Like Protein; GAF Domain Protein; Beta-Lactamase-Like Protein; CAMP Phosphodiesterases Class-II; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase Superfamily Metal-Dependent Hydrolase
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MSRAPVRLQVLGCSGSIASGSRTTAFLLDDNVLIDAGTGVGDLALDAMARVDDILVSHSHLDHVLAIPLLADSVMKLRLA QPERGPIRVHGLPETLAALRAHLFNGQLWPDFTSIPSAAYPIIRLLPFAIGDTLRFGRGDAERHVEVLPASHTVPACGFA VDSEEGWWVYSGDTGSNPALWAALKGRRIAHLIIETAFGDDERWLADLSGHLAPSSLATELAQLDGSVPVHITHPKPGEV AAVVAQIRAIDTAHRVEPLVKGLVFTL
Sequences:
>Translated_267_residues MSRAPVRLQVLGCSGSIASGSRTTAFLLDDNVLIDAGTGVGDLALDAMARVDDILVSHSHLDHVLAIPLLADSVMKLRLA QPERGPIRVHGLPETLAALRAHLFNGQLWPDFTSIPSAAYPIIRLLPFAIGDTLRFGRGDAERHVEVLPASHTVPACGFA VDSEEGWWVYSGDTGSNPALWAALKGRRIAHLIIETAFGDDERWLADLSGHLAPSSLATELAQLDGSVPVHITHPKPGEV AAVVAQIRAIDTAHRVEPLVKGLVFTL >Mature_266_residues SRAPVRLQVLGCSGSIASGSRTTAFLLDDNVLIDAGTGVGDLALDAMARVDDILVSHSHLDHVLAIPLLADSVMKLRLAQ PERGPIRVHGLPETLAALRAHLFNGQLWPDFTSIPSAAYPIIRLLPFAIGDTLRFGRGDAERHVEVLPASHTVPACGFAV DSEEGWWVYSGDTGSNPALWAALKGRRIAHLIIETAFGDDERWLADLSGHLAPSSLATELAQLDGSVPVHITHPKPGEVA AVVAQIRAIDTAHRVEPLVKGLVFTL
Specific function: Unknown
COG id: COG5212
COG function: function code T; Low-affinity cAMP phosphodiesterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28500; Mature: 28369
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAPVRLQVLGCSGSIASGSRTTAFLLDDNVLIDAGTGVGDLALDAMARVDDILVSHSH CCCCCEEEEEEECCCCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHH LDHVLAIPLLADSVMKLRLAQPERGPIRVHGLPETLAALRAHLFNGQLWPDFTSIPSAAY HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCHHCCCCHHH PIIRLLPFAIGDTLRFGRGDAERHVEVLPASHTVPACGFAVDSEEGWWVYSGDTGSNPAL HHHHHHHHHHCCCHHCCCCCHHCEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCEE WAALKGRRIAHLIIETAFGDDERWLADLSGHLAPSSLATELAQLDGSVPVHITHPKPGEV EEECCCCEEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCHH AAVVAQIRAIDTAHRVEPLVKGLVFTL HHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SRAPVRLQVLGCSGSIASGSRTTAFLLDDNVLIDAGTGVGDLALDAMARVDDILVSHSH CCCCEEEEEEECCCCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHH LDHVLAIPLLADSVMKLRLAQPERGPIRVHGLPETLAALRAHLFNGQLWPDFTSIPSAAY HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCHHCCCCHHH PIIRLLPFAIGDTLRFGRGDAERHVEVLPASHTVPACGFAVDSEEGWWVYSGDTGSNPAL HHHHHHHHHHCCCHHCCCCCHHCEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCEE WAALKGRRIAHLIIETAFGDDERWLADLSGHLAPSSLATELAQLDGSVPVHITHPKPGEV EEECCCCEEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCHH AAVVAQIRAIDTAHRVEPLVKGLVFTL HHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA