| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is 124265203
Identifier: 124265203
GI number: 124265203
Start: 11121
End: 12272
Strand: Direct
Name: 124265203
Synonym: Mpe_A0010
Alternate gene names: NA
Gene position: 11121-12272 (Clockwise)
Preceding gene: 124265201
Following gene: 124265204
Centisome position: 0.27
GC content: 70.14
Gene sequence:
>1152_bases ATGCGCACCGCCGGCACCTACGTCACCACCACCACGCTGGGCGAGGCGGTGCAGGCGTTCGTGCCCCATCCGCTGCCGCC GGCCGACCCGCCGCTGGCTGCTGAGGGCTACGCAGCAGCCAGCCGCCGCGCCGAGATGGCGCTGGCTCGGCTGGGCGGCG TGGCCGGCCTGGTGCCTTCGGTCGACTGGCTGCTCTACAGCGCCATCCGCAAGGAGGCGCTGCTCACCTCGCAGATCGAG GGCACCCAGGCCACGCTGACCGACCTGTTCGACGACGAGGCCGGCCAGGTGCTGGCCAACACTGCCGATGTCGAGGAGGT GACCAACTACCTGCGTGCCTTCCGCCTCGTGCGCGACAACCTGCGCAGCGAGGCCGGCCTGCCGATTTCGGTGCGCTTGC TGTGCGACGCCCACAGGCTGCTGCTCGACGGCGCACGCGGCGCTGGCAAGCAGCCGGGAGAACTCCGACGCTCGCAGAAC TGGATCGGCGGCGCTCGGCCGGGCCGTGCGGCCTTCGTGCCGCCGCCACCGGACCAGGTTCCGGGACTGCTGGCCGACCT GGAGCGCTTCATCCATGACCCGGAGCCTGCGCTGCCACCCCTCGTGCGCGTGGCCCTGGTGCACGTGCAGTTCGAGACCA TCCACCCGTTCCTCGACGGCAACGGGCGCATCGGACGGCTGCTGATTGCCGCCTTGTTGGAGCAGTGGGGCCTGCTGCCC GAGCCGCTGGTCTACCTGAGCGGCTACCTCAAGCAGCACCAGGCCGAGTACTACCGGCGGCTGTCGGCCGTGCGCACCGA GGGCGACTGGGAGGGCTGGGTCGGCTTCTTCCTCGATGGCGTGGAGACCGCGGCAACAGACGCCGAGCGCGGCATCGTCG CGATGGCGAGCCTGATCAACGCTGACCGCAAGCACCTGCTGGCTGCGCCCCGCGTGGGCGCGGTGGCGCTGCGCCTGTTC GAGTTGCTGCCGCTGATGCCGCGGTTCACCATCGAACAGGTGCGGCAGAAGTTGGACACCACCTTCCCCACGGCCACGGC GGCGGTGAAGCTGCTGCACGACCTGGGGATGCTGAGCGAGCTGACCGGCCAGAAGAAGAACCGCCTGTTCAGCTACGCTG CCTATGTCGAACTGCTGGCAGGGAGCCCATGA
Upstream 100 bases:
>100_bases GCTGCTGCGGCAGCCCCCCGCAAGCTTGCTTTCGCAGGCTTTCCATAAATTAAAGAACGCTTTACTATGAAAGCCTGCTG CTCAAGCAAGCTTTCATACG
Downstream 100 bases:
>100_bases CGGAGGACCAGCTCGAACAAGAGTGCCTGGCGTGGCTGGCCGACGTGGGCTGGCAACACCGCTATGGGCCGGACATCGCG CCCGATGGCGACGCCCCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MRTAGTYVTTTTLGEAVQAFVPHPLPPADPPLAAEGYAAASRRAEMALARLGGVAGLVPSVDWLLYSAIRKEALLTSQIE GTQATLTDLFDDEAGQVLANTADVEEVTNYLRAFRLVRDNLRSEAGLPISVRLLCDAHRLLLDGARGAGKQPGELRRSQN WIGGARPGRAAFVPPPPDQVPGLLADLERFIHDPEPALPPLVRVALVHVQFETIHPFLDGNGRIGRLLIAALLEQWGLLP EPLVYLSGYLKQHQAEYYRRLSAVRTEGDWEGWVGFFLDGVETAATDAERGIVAMASLINADRKHLLAAPRVGAVALRLF ELLPLMPRFTIEQVRQKLDTTFPTATAAVKLLHDLGMLSELTGQKKNRLFSYAAYVELLAGSP
Sequences:
>Translated_383_residues MRTAGTYVTTTTLGEAVQAFVPHPLPPADPPLAAEGYAAASRRAEMALARLGGVAGLVPSVDWLLYSAIRKEALLTSQIE GTQATLTDLFDDEAGQVLANTADVEEVTNYLRAFRLVRDNLRSEAGLPISVRLLCDAHRLLLDGARGAGKQPGELRRSQN WIGGARPGRAAFVPPPPDQVPGLLADLERFIHDPEPALPPLVRVALVHVQFETIHPFLDGNGRIGRLLIAALLEQWGLLP EPLVYLSGYLKQHQAEYYRRLSAVRTEGDWEGWVGFFLDGVETAATDAERGIVAMASLINADRKHLLAAPRVGAVALRLF ELLPLMPRFTIEQVRQKLDTTFPTATAAVKLLHDLGMLSELTGQKKNRLFSYAAYVELLAGSP >Mature_383_residues MRTAGTYVTTTTLGEAVQAFVPHPLPPADPPLAAEGYAAASRRAEMALARLGGVAGLVPSVDWLLYSAIRKEALLTSQIE GTQATLTDLFDDEAGQVLANTADVEEVTNYLRAFRLVRDNLRSEAGLPISVRLLCDAHRLLLDGARGAGKQPGELRRSQN WIGGARPGRAAFVPPPPDQVPGLLADLERFIHDPEPALPPLVRVALVHVQFETIHPFLDGNGRIGRLLIAALLEQWGLLP EPLVYLSGYLKQHQAEYYRRLSAVRTEGDWEGWVGFFLDGVETAATDAERGIVAMASLINADRKHLLAAPRVGAVALRLF ELLPLMPRFTIEQVRQKLDTTFPTATAAVKLLHDLGMLSELTGQKKNRLFSYAAYVELLAGSP
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fido domain [H]
Homologues:
Organism=Drosophila melanogaster, GI24582217, Length=160, Percent_Identity=32.5, Blast_Score=72, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003812 [H]
Pfam domain/function: PF02661 Fic [H]
EC number: NA
Molecular weight: Translated: 41726; Mature: 41726
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTAGTYVTTTTLGEAVQAFVPHPLPPADPPLAAEGYAAASRRAEMALARLGGVAGLVPS CCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH VDWLLYSAIRKEALLTSQIEGTQATLTDLFDDEAGQVLANTADVEEVTNYLRAFRLVRDN HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH LRSEAGLPISVRLLCDAHRLLLDGARGAGKQPGELRRSQNWIGGARPGRAAFVPPPPDQV HHHCCCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHC PGLLADLERFIHDPEPALPPLVRVALVHVQFETIHPFLDGNGRIGRLLIAALLEQWGLLP CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHCCCC EPLVYLSGYLKQHQAEYYRRLSAVRTEGDWEGWVGFFLDGVETAATDAERGIVAMASLIN CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADRKHLLAAPRVGAVALRLFELLPLMPRFTIEQVRQKLDTTFPTATAAVKLLHDLGMLSE HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LTGQKKNRLFSYAAYVELLAGSP HHCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRTAGTYVTTTTLGEAVQAFVPHPLPPADPPLAAEGYAAASRRAEMALARLGGVAGLVPS CCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH VDWLLYSAIRKEALLTSQIEGTQATLTDLFDDEAGQVLANTADVEEVTNYLRAFRLVRDN HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH LRSEAGLPISVRLLCDAHRLLLDGARGAGKQPGELRRSQNWIGGARPGRAAFVPPPPDQV HHHCCCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHC PGLLADLERFIHDPEPALPPLVRVALVHVQFETIHPFLDGNGRIGRLLIAALLEQWGLLP CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHCCCC EPLVYLSGYLKQHQAEYYRRLSAVRTEGDWEGWVGFFLDGVETAATDAERGIVAMASLIN CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADRKHLLAAPRVGAVALRLFELLPLMPRFTIEQVRQKLDTTFPTATAAVKLLHDLGMLSE HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LTGQKKNRLFSYAAYVELLAGSP HHCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]