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The map label for this gene is aubA

Identifier: 124028468

GI number: 124028468

Start: 1629216

End: 1630637

Strand: Direct

Name: aubA

Synonym: Hbut_1628

Alternate gene names: 124028468

Gene position: 1629216-1630637 (Clockwise)

Preceding gene: 124028467

Following gene: 124028469

Centisome position: 97.72

GC content: 50.56

Gene sequence:

>1422_bases
TTGGCAACGCCAGCCAGGAGGATACCTAGGGTAAGGGTTAGGGGTATCTACGCGACAGCCCTGACAAAACTGGTAATCGA
TATGGGTTTTCAAGTAGTCCAACCATCGAGAATCATAGCTGATAGGTTTAGCCTGCCAATGCTGACACTGCCAGCTGATG
TTACGATAAAGGATAGCGACAACAACCCATCAGAACTGCTCATAGTGGGATATGAATGGGCTGTAAATATTATACTCGAG
AAGCTAAGGGATACACTCCCATACTCATTCTATTGGCGGAGCAGCCTCCCCCTACACTCCACGGTCAAGGCCAGGGTTAT
TGGCCTCCGCGACAATCGCTGCATAGCACGCGTCGGTGATGTTGAGGCAGAACTTCTCGTAGATAGGAGCGAGTGTATTG
AGGACCGCGAAGTTGTTGGCGGCGTTGTTAGACCCGGCGTAAAGCCGAGAGAAACCCCGAGGATAGTGCCGGGAGCAAGG
GTGATAGGAGACTACGCAATACTGATCGAGTCCAGCGAGCCTAGGGTAACGATAAGCGAGCATGTTAGGAGCCCGGAGAA
GCGAGCACTACTAGCAGCAATAGCTACGAGCTTTACCGAGCAAGGCTACGCTGTACACTGGCGTAGTAGTAGCCAGCATG
CCGAGAGGGAGGAGTTAGAAAAACACCTTAGGCAGCTACGTGAGGCGCTAGCCGAGGCTAGGAAGAGGGCTGAAGAGGGC
CCGCCCGGAGTGTATAGCGAAGGAGAAGCCGTGGTACTAGTGCATCTCAGCTCTGCAGACAAACAGAAGCTGGACGAGAT
AAGGGATAGTGTTGTCGCAACGATTCCCTACCACCATACTGTAAAGAGCTTGCAGCCAAGCCTCTCAAAAGTCATAGACT
ACGCCGAGAAGGTGAAGGCCCTCGGCGTAGACTCAGAAAAGCTCGTCCGTGCACTGTTAGAACTCGTAGCCGAAGACCTA
GCGTCCAGGCGCAGAATTAGAATCCTACATGTTAAGCCCAGCGGCGAATACATAGAGCTTGGAAAGGCAGAGATAAAGTC
GGTATATGTTGAAGACAAAAGCCTCGTAATTGTGCTCGAGAGGACTGTAAAGAGTCGAGGAGTCTATGACGGCCTAGGTG
TTGAAAAGGAGCCTGGAGACAGGATAGTAACGGAGGTTAGGACGGACGAGTGGATAGTAAAACACACATACTATGCTCCC
GATGGCACAGTCAAAGGCACATACATAAACATAAACACACCACCAGAAATAGCCGAGGATGCAATAGTATACCTAGACCT
TGAAATCGACATAGTCAAGAAGCCCGGCAAGAAACCAAAAATAGTAGATGCGGAAGAGCTAGATAAGTACCATGAACAAG
GCATAGTGACAACCAAGCTGAAGGAAAAGGCCCTCGAAATAGCGAGGAAACTAGCAGGCTAG

Upstream 100 bases:

>100_bases
ACGCCTCCTACATTAACGGTGCCTCCATACCAATCGATGGCGGCTATCTACGCTCGGTATTCTAGCAGCCCTCCCCGGAA
CACCCTAGGGAGAACAAGCC

Downstream 100 bases:

>100_bases
CCAATCACAGTAAAGCTATTAGAACCCACCCAGACCACAACACCATTTTCCTACGGGAGCCCAGGCTGCGGGGGTGCCCG
AGCCAGGTCAAAGGGGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: AU-binding protein

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MATPARRIPRVRVRGIYATALTKLVIDMGFQVVQPSRIIADRFSLPMLTLPADVTIKDSDNNPSELLIVGYEWAVNIILE
KLRDTLPYSFYWRSSLPLHSTVKARVIGLRDNRCIARVGDVEAELLVDRSECIEDREVVGGVVRPGVKPRETPRIVPGAR
VIGDYAILIESSEPRVTISEHVRSPEKRALLAAIATSFTEQGYAVHWRSSSQHAEREELEKHLRQLREALAEARKRAEEG
PPGVYSEGEAVVLVHLSSADKQKLDEIRDSVVATIPYHHTVKSLQPSLSKVIDYAEKVKALGVDSEKLVRALLELVAEDL
ASRRRIRILHVKPSGEYIELGKAEIKSVYVEDKSLVIVLERTVKSRGVYDGLGVEKEPGDRIVTEVRTDEWIVKHTYYAP
DGTVKGTYININTPPEIAEDAIVYLDLEIDIVKKPGKKPKIVDAEELDKYHEQGIVTTKLKEKALEIARKLAG

Sequences:

>Translated_473_residues
MATPARRIPRVRVRGIYATALTKLVIDMGFQVVQPSRIIADRFSLPMLTLPADVTIKDSDNNPSELLIVGYEWAVNIILE
KLRDTLPYSFYWRSSLPLHSTVKARVIGLRDNRCIARVGDVEAELLVDRSECIEDREVVGGVVRPGVKPRETPRIVPGAR
VIGDYAILIESSEPRVTISEHVRSPEKRALLAAIATSFTEQGYAVHWRSSSQHAEREELEKHLRQLREALAEARKRAEEG
PPGVYSEGEAVVLVHLSSADKQKLDEIRDSVVATIPYHHTVKSLQPSLSKVIDYAEKVKALGVDSEKLVRALLELVAEDL
ASRRRIRILHVKPSGEYIELGKAEIKSVYVEDKSLVIVLERTVKSRGVYDGLGVEKEPGDRIVTEVRTDEWIVKHTYYAP
DGTVKGTYININTPPEIAEDAIVYLDLEIDIVKKPGKKPKIVDAEELDKYHEQGIVTTKLKEKALEIARKLAG
>Mature_472_residues
ATPARRIPRVRVRGIYATALTKLVIDMGFQVVQPSRIIADRFSLPMLTLPADVTIKDSDNNPSELLIVGYEWAVNIILEK
LRDTLPYSFYWRSSLPLHSTVKARVIGLRDNRCIARVGDVEAELLVDRSECIEDREVVGGVVRPGVKPRETPRIVPGARV
IGDYAILIESSEPRVTISEHVRSPEKRALLAAIATSFTEQGYAVHWRSSSQHAEREELEKHLRQLREALAEARKRAEEGP
PGVYSEGEAVVLVHLSSADKQKLDEIRDSVVATIPYHHTVKSLQPSLSKVIDYAEKVKALGVDSEKLVRALLELVAEDLA
SRRRIRILHVKPSGEYIELGKAEIKSVYVEDKSLVIVLERTVKSRGVYDGLGVEKEPGDRIVTEVRTDEWIVKHTYYAPD
GTVKGTYININTPPEIAEDAIVYLDLEIDIVKKPGKKPKIVDAEELDKYHEQGIVTTKLKEKALEIARKLAG

Specific function: Binds to RNA in loop regions with AU-rich sequences

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AUBA_HYPBU (A2BN82)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013788.1
- ProteinModelPortal:   A2BN82
- STRING:   A2BN82
- GeneID:   4781637
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1628
- eggNOG:   arNOG04009
- HOGENOM:   HBG705374
- OMA:   RGIYSTA
- BioCyc:   HBUT415426:HBUT_1628-MONOMER
- HAMAP:   MF_01910
- InterPro:   IPR007295
- InterPro:   IPR019307

Pfam domain/function: PF04167 DUF402; PF10150 RNase_E_G

EC number: NA

Molecular weight: Translated: 52983; Mature: 52851

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPARRIPRVRVRGIYATALTKLVIDMGFQVVQPSRIIADRFSLPMLTLPADVTIKDSD
CCCCCHHCCCEEEHHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCEEECCCCEEEECCC
NNPSELLIVGYEWAVNIILEKLRDTLPYSFYWRSSLPLHSTVKARVIGLRDNRCIARVGD
CCCCEEEEEEHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEECC
VEAELLVDRSECIEDREVVGGVVRPGVKPRETPRIVPGARVIGDYAILIESSEPRVTISE
CHHHHEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCEEHHH
HVRSPEKRALLAAIATSFTEQGYAVHWRSSSQHAEREELEKHLRQLREALAEARKRAEEG
HHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PPGVYSEGEAVVLVHLSSADKQKLDEIRDSVVATIPYHHTVKSLQPSLSKVIDYAEKVKA
CCCCCCCCCEEEEEEECCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LGVDSEKLVRALLELVAEDLASRRRIRILHVKPSGEYIELGKAEIKSVYVEDKSLVIVLE
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCHHHEEEEEEECCCEEEEEE
RTVKSRGVYDGLGVEKEPGDRIVTEVRTDEWIVKHTYYAPDGTVKGTYININTPPEIAED
HHHHHCCCCCCCCCCCCCCCHHHHEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCC
AIVYLDLEIDIVKKPGKKPKIVDAEELDKYHEQGIVTTKLKEKALEIARKLAG
EEEEEEEEEEEEECCCCCCCEECHHHHHHHHHCCCEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATPARRIPRVRVRGIYATALTKLVIDMGFQVVQPSRIIADRFSLPMLTLPADVTIKDSD
CCCCHHCCCEEEHHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCEEECCCCEEEECCC
NNPSELLIVGYEWAVNIILEKLRDTLPYSFYWRSSLPLHSTVKARVIGLRDNRCIARVGD
CCCCEEEEEEHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEECC
VEAELLVDRSECIEDREVVGGVVRPGVKPRETPRIVPGARVIGDYAILIESSEPRVTISE
CHHHHEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCEEHHH
HVRSPEKRALLAAIATSFTEQGYAVHWRSSSQHAEREELEKHLRQLREALAEARKRAEEG
HHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PPGVYSEGEAVVLVHLSSADKQKLDEIRDSVVATIPYHHTVKSLQPSLSKVIDYAEKVKA
CCCCCCCCCEEEEEEECCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LGVDSEKLVRALLELVAEDLASRRRIRILHVKPSGEYIELGKAEIKSVYVEDKSLVIVLE
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCHHHEEEEEEECCCEEEEEE
RTVKSRGVYDGLGVEKEPGDRIVTEVRTDEWIVKHTYYAPDGTVKGTYININTPPEIAED
HHHHHCCCCCCCCCCCCCCCHHHHEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCC
AIVYLDLEIDIVKKPGKKPKIVDAEELDKYHEQGIVTTKLKEKALEIARKLAG
EEEEEEEEEEEEECCCCCCCEECHHHHHHHHHCCCEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA