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The map label for this gene is rnp4

Identifier: 124028437

GI number: 124028437

Start: 1601280

End: 1601627

Strand: Direct

Name: rnp4

Synonym: Hbut_1593

Alternate gene names: 124028437

Gene position: 1601280-1601627 (Clockwise)

Preceding gene: 124028433

Following gene: 124028438

Centisome position: 96.05

GC content: 60.34

Gene sequence:

>348_bases
GTGTCTGGTTCAAAAGCTAAGTCCAGAGAGCTTGCTAGGGATGTCGCACTACAGGCCATCCGTACCCTCTACCTGGCAGC
TGTTGACGCCGTGCGCAGGGGAGACTACGAGCTTGCTAGGAGGCTCGTAGCAGAGGCTGATGAAACTCGCCGTGTTATGA
GGCTACGCAAGCCCCGCTTTCTGCGCCGCGGCGTCTGTAGAAATTGTAGTCTTCCACTCGTACCGGGGGTTACGGCGCGC
TACCGCCTCGTCCGGGACGGCAGCGTGACGAGGCTTGTCGTAACCTGTCTAGCGTGCGGGTATATACACCGCCACGTTCT
CGTCCAGAGGAGGCGGGGAAGCCGCTAG

Upstream 100 bases:

>100_bases
ATCTCCCGGGGCACAGTCTCTAGGGCGGCTTCAGCGAGCACCAGCTTTATCCTGGGCCGCTGCATGGCTCTACCCTACCC
AGCTAGGGGTTTCGGGGCCG

Downstream 100 bases:

>100_bases
TATGCGTTCCAGGCTTGCAAGGCTGAAGGAGATTGTTCAGCAGGGCCCAGCTGACGTTATAATAGGCAAGAAAGGGCTCA
CCGAGGCAGTGTTAAAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P component 4

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSGSKAKSRELARDVALQAIRTLYLAAVDAVRRGDYELARRLVAEADETRRVMRLRKPRFLRRGVCRNCSLPLVPGVTAR
YRLVRDGSVTRLVVTCLACGYIHRHVLVQRRRGSR

Sequences:

>Translated_115_residues
MSGSKAKSRELARDVALQAIRTLYLAAVDAVRRGDYELARRLVAEADETRRVMRLRKPRFLRRGVCRNCSLPLVPGVTAR
YRLVRDGSVTRLVVTCLACGYIHRHVLVQRRRGSR
>Mature_114_residues
SGSKAKSRELARDVALQAIRTLYLAAVDAVRRGDYELARRLVAEADETRRVMRLRKPRFLRRGVCRNCSLPLVPGVTARY
RLVRDGSVTRLVVTCLACGYIHRHVLVQRRRGSR

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP4_HYPBU (A2BN51)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013757.1
- ProteinModelPortal:   A2BN51
- SMR:   A2BN51
- STRING:   A2BN51
- GeneID:   4781977
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1593
- eggNOG:   arNOG18317
- HOGENOM:   HBG731499
- BioCyc:   HBUT415426:HBUT_1593-MONOMER
- HAMAP:   MF_00757
- InterPro:   IPR016432
- InterPro:   IPR007175
- PANTHER:   PTHR14742
- PIRSF:   PIRSF004878

Pfam domain/function: PF04032 Rpr2

EC number: =3.1.26.5

Molecular weight: Translated: 13133; Mature: 13002

Theoretical pI: Translated: 12.04; Mature: 12.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSKAKSRELARDVALQAIRTLYLAAVDAVRRGDYELARRLVAEADETRRVMRLRKPRF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCHHH
LRRGVCRNCSLPLVPGVTARYRLVRDGSVTRLVVTCLACGYIHRHVLVQRRRGSR
HHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGSKAKSRELARDVALQAIRTLYLAAVDAVRRGDYELARRLVAEADETRRVMRLRKPRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCHHH
LRRGVCRNCSLPLVPGVTARYRLVRDGSVTRLVVTCLACGYIHRHVLVQRRRGSR
HHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA