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The map label for this gene is 124028404

Identifier: 124028404

GI number: 124028404

Start: 1568778

End: 1569320

Strand: Reverse

Name: 124028404

Synonym: Hbut_1558

Alternate gene names: NA

Gene position: 1569320-1568778 (Counterclockwise)

Preceding gene: 124028405

Following gene: 124028403

Centisome position: 94.13

GC content: 51.2

Gene sequence:

>543_bases
ATGCAGGTTGGTGAAGAGAAAAAGCTAGGAATGTGCAGTAGTGAGATACGAGACCTACTTAGAGGGCTTGTAGAGTGTAT
TGTAGGAGTAGACGTCCTAAAGCACTACAGCCTCCTATGCAAACACAGCAGCGGTATTGTGGATGTCTACGCTCTCCTAG
GCGAACTCTACAGGTACCTCGACAGCAGCGTCTCTGTGGAGCCATTCACAGCAGGCGTACATATAGCCAGGATTCGGAGG
AGGAGGCTGATACCCCTACTCGGCCTAGCCCAGCTCCTACGGCGGGAAGCTGGGTGGTACAGGGCGGGATACGTGATTGT
TACGGAGCATGCTGAAAAACTCTTCCTCTATGGCCGCGACGTGTTTCAGTCATCCATAGAGGCTATCGCAGAATACACAG
GGAGCTGCAACAAGTACGACACCTACCTGGTACTAAACAAGCGTATGGAGCCACTGGGTTGGGGCAGGCTAGTCAAGTAC
AACAATAGGATATATATCCAAAACATAGTTGACGCTGGATGGTACCTAAGAAGCGGGGTGTAG

Upstream 100 bases:

>100_bases
TACCCGGTAAGCAGAGCTACGCTGGCCTAAAATTAGACAGACGTGTATCAAGGTGCCGCCGCTTCTACCCCCACATACAC
GGGACTGAGGGATTTACAAT

Downstream 100 bases:

>100_bases
CAGGCAGTGGCGCTACCCGATGGCGCATTCGTACTTGTAGAATACACGCTCCGCGTAAAGGAGACAGGTGAGGTAATAGA
CACGACGAGCGAAGAGGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MQVGEEKKLGMCSSEIRDLLRGLVECIVGVDVLKHYSLLCKHSSGIVDVYALLGELYRYLDSSVSVEPFTAGVHIARIRR
RRLIPLLGLAQLLRREAGWYRAGYVIVTEHAEKLFLYGRDVFQSSIEAIAEYTGSCNKYDTYLVLNKRMEPLGWGRLVKY
NNRIYIQNIVDAGWYLRSGV

Sequences:

>Translated_180_residues
MQVGEEKKLGMCSSEIRDLLRGLVECIVGVDVLKHYSLLCKHSSGIVDVYALLGELYRYLDSSVSVEPFTAGVHIARIRR
RRLIPLLGLAQLLRREAGWYRAGYVIVTEHAEKLFLYGRDVFQSSIEAIAEYTGSCNKYDTYLVLNKRMEPLGWGRLVKY
NNRIYIQNIVDAGWYLRSGV
>Mature_180_residues
MQVGEEKKLGMCSSEIRDLLRGLVECIVGVDVLKHYSLLCKHSSGIVDVYALLGELYRYLDSSVSVEPFTAGVHIARIRR
RRLIPLLGLAQLLRREAGWYRAGYVIVTEHAEKLFLYGRDVFQSSIEAIAEYTGSCNKYDTYLVLNKRMEPLGWGRLVKY
NNRIYIQNIVDAGWYLRSGV

Specific function: Unknown

COG id: COG1374

COG function: function code J; Protein involved in ribosomal biogenesis, contains PUA domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR005155 [H]

Pfam domain/function: PF03657 UPF0113 [H]

EC number: NA

Molecular weight: Translated: 20580; Mature: 20580

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVGEEKKLGMCSSEIRDLLRGLVECIVGVDVLKHYSLLCKHSSGIVDVYALLGELYRYL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DSSVSVEPFTAGVHIARIRRRRLIPLLGLAQLLRREAGWYRAGYVIVTEHAEKLFLYGRD
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCEEEEECCCHHHHHHHHH
VFQSSIEAIAEYTGSCNKYDTYLVLNKRMEPLGWGRLVKYNNRIYIQNIVDAGWYLRSGV
HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCEEEEEEHHCCCHHHHCCC
>Mature Secondary Structure
MQVGEEKKLGMCSSEIRDLLRGLVECIVGVDVLKHYSLLCKHSSGIVDVYALLGELYRYL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DSSVSVEPFTAGVHIARIRRRRLIPLLGLAQLLRREAGWYRAGYVIVTEHAEKLFLYGRD
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCEEEEECCCHHHHHHHHH
VFQSSIEAIAEYTGSCNKYDTYLVLNKRMEPLGWGRLVKYNNRIYIQNIVDAGWYLRSGV
HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCEEEEEEHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]