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The map label for this gene is 124028254

Identifier: 124028254

GI number: 124028254

Start: 1404964

End: 1405542

Strand: Direct

Name: 124028254

Synonym: Hbut_1405

Alternate gene names: NA

Gene position: 1404964-1405542 (Clockwise)

Preceding gene: 124028253

Following gene: 124028257

Centisome position: 84.27

GC content: 53.54

Gene sequence:

>579_bases
GTGACCCCAGGCCTCCTAAGGCTCTACGCTAAGGTGCCACCGGACCGTATCGGCGTGCTGATAGGCGAAGGCGGCAAGGT
GAAGATAGAGGTTATGAAGAGGACCAGGACAAAGATAACCGTGGACAGCACCACCGGCATGGTTATAATTGAGCCTGAGT
CGCCAGACGTGCCACCATACATGGTTATGAAGGCCCAGGAGTTCGTACGGGCAATAGCATACGGCTTCAGCCCCGAGCGC
GCCATGAGGGTTCTCGACGACGACCAGGTACTAGTAGTGATAGATCTCAAGCAGTACGTAGGCGATAGCCCTAACCACCT
GCAGAGGGTGAAGGGCAGGATCATAGGCGAGAAGGGCAGAGCTAGGAAGACCATAGAGGAGATGACTGGCACCTACATAT
CAATCTACGACAACTACGTCGCAATAATCGGGGACTTCGAAACAGCAAACATAGCAAAACAGGCAATAGAAATGCTGATA
CAGGGCAGGCAACACAGCACAGTCTACAGGTTCCTGGAGAGAACAATGTTCAGGCTACGCCGCGCACGCATGACCGAGCT
ATGGGAACAGCCATTCTAA

Upstream 100 bases:

>100_bases
CCGAGCCCCAGGAGCTACTCGAGAGGGTGAAACAATGCAGGATACAGTGCGTCGAGAGGAAAGTGGAGGAGGAAACTCAG
CGGGCCAGCAGGAGGGCAGG

Downstream 100 bases:

>100_bases
CCCCATTCCATCGGGGATGACGAAAGCCAGGATTACCGACAAGTGATGATTCTCCCGAAGCCCGACCCCTACCCATGCTG
ATCTACCAAGCTTAAGATAG

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTPGLLRLYAKVPPDRIGVLIGEGGKVKIEVMKRTRTKITVDSTTGMVIIEPESPDVPPYMVMKAQEFVRAIAYGFSPER
AMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEKGRARKTIEEMTGTYISIYDNYVAIIGDFETANIAKQAIEMLI
QGRQHSTVYRFLERTMFRLRRARMTELWEQPF

Sequences:

>Translated_192_residues
MTPGLLRLYAKVPPDRIGVLIGEGGKVKIEVMKRTRTKITVDSTTGMVIIEPESPDVPPYMVMKAQEFVRAIAYGFSPER
AMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEKGRARKTIEEMTGTYISIYDNYVAIIGDFETANIAKQAIEMLI
QGRQHSTVYRFLERTMFRLRRARMTELWEQPF
>Mature_191_residues
TPGLLRLYAKVPPDRIGVLIGEGGKVKIEVMKRTRTKITVDSTTGMVIIEPESPDVPPYMVMKAQEFVRAIAYGFSPERA
MRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEKGRARKTIEEMTGTYISIYDNYVAIIGDFETANIAKQAIEMLIQ
GRQHSTVYRFLERTMFRLRRARMTELWEQPF

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Homo sapiens, GI10047140, Length=121, Percent_Identity=37.1900826446281, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324720, Length=126, Percent_Identity=30.952380952381, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI20129085, Length=174, Percent_Identity=30.4597701149425, Blast_Score=70, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 21995; Mature: 21864

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPGLLRLYAKVPPDRIGVLIGEGGKVKIEVMKRTRTKITVDSTTGMVIIEPESPDVPPY
CCCHHEEHHHCCCCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEECCCCCCCCHH
MVMKAQEFVRAIAYGFSPERAMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEKGR
HHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHHHHHHCCCCCCH
ARKTIEEMTGTYISIYDNYVAIIGDFETANIAKQAIEMLIQGRQHSTVYRFLERTMFRLR
HHHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RARMTELWEQPF
HHHHHHHHCCCC
>Mature Secondary Structure 
TPGLLRLYAKVPPDRIGVLIGEGGKVKIEVMKRTRTKITVDSTTGMVIIEPESPDVPPY
CCHHEEHHHCCCCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEECCCCCCCCHH
MVMKAQEFVRAIAYGFSPERAMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEKGR
HHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHHHHHHCCCCCCH
ARKTIEEMTGTYISIYDNYVAIIGDFETANIAKQAIEMLIQGRQHSTVYRFLERTMFRLR
HHHHHHHHCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RARMTELWEQPF
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]