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The map label for this gene is lysM [H]

Identifier: 124028194

GI number: 124028194

Start: 1334787

End: 1335233

Strand: Direct

Name: lysM [H]

Synonym: Hbut_1340

Alternate gene names: 124028194

Gene position: 1334787-1335233 (Clockwise)

Preceding gene: 124028189

Following gene: 124028199

Centisome position: 80.06

GC content: 59.06

Gene sequence:

>447_bases
GTGTCCCCTAGCGGTAGCATGGAGAAGCCGCTGCGCCTAGACGAGAAGGACTATAGGCTGCTCGAGCTGCTCCGCCGCGA
CGCCAGGGCGCCCTACTCCAGGCTCGCCGAGGAGCTCGGCATCTCCGAGTCTGCTGTGCGTAAGAGGATTGCGAGGCTCA
GGAAGCTCGGCGTAATAAAGCGGTTCACCCTGGAGTACGACCTGCCCGACGAGGTTATAGCGCTGGTGCTCGTTAGGACC
CAGCCTCCCATCCAGGCGCCGGAGGTCTCGAGAAAGATCATGGAGCACTCGCACGTGGACCGGGTCTACGAGGTAACCGG
CGAGTACGACATAGTCGTCATAGCCCGTGCACGGTCAACCAAGGACATCAACGAGATTATAGACTATATCCGCAGCATAA
AGGGCGTAGTGGGAACATACACTATGATAGTCCTGCGCAGCTACTAG

Upstream 100 bases:

>100_bases
GTGGGCAGAGTAGCTGTTGGCGGTGGCGGGCTAGGTGAGCCCGTTAGGCCCTCTGGGAACCGTGGCATGGTTATAGGGCG
TGTGTGGGGTGCGTCCGTAC

Downstream 100 bases:

>100_bases
AACGGCGCCCGGGAGCCCCCGGGATGCAGGGCAGGGCCAGCACGGTGTAGGAGCACGGCGCTAGGCCCGGCAACACCGCG
TCGCGGCACCGGGCCGCCTC

Product: HTH-type transcriptional regulator lysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSPSGSMEKPLRLDEKDYRLLELLRRDARAPYSRLAEELGISESAVRKRIARLRKLGVIKRFTLEYDLPDEVIALVLVRT
QPPIQAPEVSRKIMEHSHVDRVYEVTGEYDIVVIARARSTKDINEIIDYIRSIKGVVGTYTMIVLRSY

Sequences:

>Translated_148_residues
MSPSGSMEKPLRLDEKDYRLLELLRRDARAPYSRLAEELGISESAVRKRIARLRKLGVIKRFTLEYDLPDEVIALVLVRT
QPPIQAPEVSRKIMEHSHVDRVYEVTGEYDIVVIARARSTKDINEIIDYIRSIKGVVGTYTMIVLRSY
>Mature_147_residues
SPSGSMEKPLRLDEKDYRLLELLRRDARAPYSRLAEELGISESAVRKRIARLRKLGVIKRFTLEYDLPDEVIALVLVRTQ
PPIQAPEVSRKIMEHSHVDRVYEVTGEYDIVVIARARSTKDINEIIDYIRSIKGVVGTYTMIVLRSY

Specific function: In the absence or at low concentrations of lysine, activates the biosynthesis of this amino acid via the diaminopimelate pathway [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17087; Mature: 16956

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSGSMEKPLRLDEKDYRLLELLRRDARAPYSRLAEELGISESAVRKRIARLRKLGVIK
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RFTLEYDLPDEVIALVLVRTQPPIQAPEVSRKIMEHSHVDRVYEVTGEYDIVVIARARST
HHEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
KDINEIIDYIRSIKGVVGTYTMIVLRSY
CCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SPSGSMEKPLRLDEKDYRLLELLRRDARAPYSRLAEELGISESAVRKRIARLRKLGVIK
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RFTLEYDLPDEVIALVLVRTQPPIQAPEVSRKIMEHSHVDRVYEVTGEYDIVVIARARST
HHEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
KDINEIIDYIRSIKGVVGTYTMIVLRSY
CCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]