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The map label for this gene is lrs14 [H]

Identifier: 124028118

GI number: 124028118

Start: 1265747

End: 1266172

Strand: Reverse

Name: lrs14 [H]

Synonym: Hbut_1261

Alternate gene names: 124028118

Gene position: 1266172-1265747 (Counterclockwise)

Preceding gene: 124028119

Following gene: 124028116

Centisome position: 75.95

GC content: 46.01

Gene sequence:

>426_bases
GTGGAGGGGCTACATGCGGAGGCTGCACTCCGCTATAAGCTTAAACTACCTACCGGCAAGGAAACAGTTGTTGTTGAGGG
GTTGAGGTTCTGCTACGACCTAAGTGAGACTGATGCAATGATTCTCTTTGAGCTGCTAAAGGGTGGAGAGTATTCTGTCG
ACGACCTTACACAAATATTGAAGCTTAGTAAGGCAACAGTCAATAGGAGTTTATCAAAACTGGTAGAGATAGGCTTTGTG
TCGCGTACAAGAGAAAAGAAGGCAGGCGTTGGCAGGCCAAGGTACAAGTACTACATTGACGACCCTGAAGCTGTACTGCT
GAGGATTATCCAGGACTTCGAGAATTGTTCGCGAGCATTTAGCGAGGCACTTAGAGATATTCTAAAGATGATTAAGAGCC
ATCAAGAGAAGAGGAAGACGGAATAG

Upstream 100 bases:

>100_bases
AGACTAGCGGTTTAGGCTAAGCATATAGTTCAAGAGAACAATTTCAATGTAAATAAATATAGTGGGGATACCTTTTACAC
TAACTTATGGTGAGGCGCGA

Downstream 100 bases:

>100_bases
GAGGAAAGAACATAGCTGTAAATCAGAACCAGGGACTAATAAGCCGATTTCTATACAACACCTTCCTCTTCAACAAATTC
TTCTTCCTCAACTTCCTCTG

Product: HTH-type transcriptional regulator lrs14

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MEGLHAEAALRYKLKLPTGKETVVVEGLRFCYDLSETDAMILFELLKGGEYSVDDLTQILKLSKATVNRSLSKLVEIGFV
SRTREKKAGVGRPRYKYYIDDPEAVLLRIIQDFENCSRAFSEALRDILKMIKSHQEKRKTE

Sequences:

>Translated_141_residues
MEGLHAEAALRYKLKLPTGKETVVVEGLRFCYDLSETDAMILFELLKGGEYSVDDLTQILKLSKATVNRSLSKLVEIGFV
SRTREKKAGVGRPRYKYYIDDPEAVLLRIIQDFENCSRAFSEALRDILKMIKSHQEKRKTE
>Mature_141_residues
MEGLHAEAALRYKLKLPTGKETVVVEGLRFCYDLSETDAMILFELLKGGEYSVDDLTQILKLSKATVNRSLSKLVEIGFV
SRTREKKAGVGRPRYKYYIDDPEAVLLRIIQDFENCSRAFSEALRDILKMIKSHQEKRKTE

Specific function: Acts in transcription regulation. Binds to multiple sequences in its own promoter [H]

COG id: COG3355

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002831
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01978 TrmB [H]

EC number: NA

Molecular weight: Translated: 16174; Mature: 16174

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGLHAEAALRYKLKLPTGKETVVVEGLRFCYDLSETDAMILFELLKGGEYSVDDLTQIL
CCCCHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
KLSKATVNRSLSKLVEIGFVSRTREKKAGVGRPRYKYYIDDPEAVLLRIIQDFENCSRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
SEALRDILKMIKSHQEKRKTE
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEGLHAEAALRYKLKLPTGKETVVVEGLRFCYDLSETDAMILFELLKGGEYSVDDLTQIL
CCCCHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
KLSKATVNRSLSKLVEIGFVSRTREKKAGVGRPRYKYYIDDPEAVLLRIIQDFENCSRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
SEALRDILKMIKSHQEKRKTE
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10049378; 11427726 [H]