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The map label for this gene is yjjV [C]

Identifier: 124028101

GI number: 124028101

Start: 1249431

End: 1250189

Strand: Direct

Name: yjjV [C]

Synonym: Hbut_1244

Alternate gene names: 124028101

Gene position: 1249431-1250189 (Clockwise)

Preceding gene: 124028100

Following gene: 124028111

Centisome position: 74.94

GC content: 45.59

Gene sequence:

>759_bases
ATGGTTGAAAGGGTAGCTTACATAGATGTTCACAGCCACCTCCCAGAATACAGTGATGCCGATATTGAACGCATACTAGC
CAGCATAGATGTTGTAATAGTTTCTGTCGGCGAGGATTTAGAGAGCAGCATTAGAAGCATTGAGATAGCCGAGAAATATA
AGGATAGGATATACCCCTGTATAGGCCTTCACCCCTGGAATGTTAAGTCTCTTAGGGAAGCTCTAGACGAAGCGAAAAGG
ATAGTCGATCTAGCACTGAGCCGAAACATTAAATGCCTAGGAGAGGTAGGCCTTGACACAAAGTTTGTTGGCGAGACCAT
AGAGCTGCAGCGTGAAGTTTTCCGCATATTTCTCGAAGCTGCACGTGACTACAAGCTATTCCTTAACTTGCATACAGCGG
GAACATGGGAAGAGGTTTTCAACCTACTAATACGCTACGATATTGTTGCAGCTAACTTCCACTGGTATACTGGGCCGCTA
CACTTGCTAAAGGACATAGAGTCTGCTGGCTATACGATATCGATAAACCCTGCTGTAAAGATACAGGCTAAGCACCGCAA
TGTGGTAAAGGCAGCACCCATATCGATAATGCTTACCGAGAGTGATTCGCCGTACAAGTATCGCAGTCTAGAGCTGGAGC
CCCGCCTTGTAGCTGATGCAGTGGCCGAGATAGCAGCTATAAAATCCGTGGAGGCTAGCGAAGTTAAAAAGTTGGTCTAT
GAGAACTTTAGGAAAAAGGTGTTAAGTGTTATTGGCTAG

Upstream 100 bases:

>100_bases
TCATCACAGCCGGGTCAAGCTCTCCAGGGAATTTATCATTTCGGTTTAGTACTTGTCTATATTACTTGTCTTAGTATATT
GGTGCAGTCGGGGAGGATGT

Downstream 100 bases:

>100_bases
CCAATACTCTTGCCTTGAAGTACATCGTCAGGCACGATACCCTTGTATGCCTCGTAATATATTGGTGTGCTCTTTAGCAG
CTTAATGTTGCGTACATACT

Product: DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MVERVAYIDVHSHLPEYSDADIERILASIDVVIVSVGEDLESSIRSIEIAEKYKDRIYPCIGLHPWNVKSLREALDEAKR
IVDLALSRNIKCLGEVGLDTKFVGETIELQREVFRIFLEAARDYKLFLNLHTAGTWEEVFNLLIRYDIVAANFHWYTGPL
HLLKDIESAGYTISINPAVKIQAKHRNVVKAAPISIMLTESDSPYKYRSLELEPRLVADAVAEIAAIKSVEASEVKKLVY
ENFRKKVLSVIG

Sequences:

>Translated_252_residues
MVERVAYIDVHSHLPEYSDADIERILASIDVVIVSVGEDLESSIRSIEIAEKYKDRIYPCIGLHPWNVKSLREALDEAKR
IVDLALSRNIKCLGEVGLDTKFVGETIELQREVFRIFLEAARDYKLFLNLHTAGTWEEVFNLLIRYDIVAANFHWYTGPL
HLLKDIESAGYTISINPAVKIQAKHRNVVKAAPISIMLTESDSPYKYRSLELEPRLVADAVAEIAAIKSVEASEVKKLVY
ENFRKKVLSVIG
>Mature_252_residues
MVERVAYIDVHSHLPEYSDADIERILASIDVVIVSVGEDLESSIRSIEIAEKYKDRIYPCIGLHPWNVKSLREALDEAKR
IVDLALSRNIKCLGEVGLDTKFVGETIELQREVFRIFLEAARDYKLFLNLHTAGTWEEVFNLLIRYDIVAANFHWYTGPL
HLLKDIESAGYTISINPAVKIQAKHRNVVKAAPISIMLTESDSPYKYRSLELEPRLVADAVAEIAAIKSVEASEVKKLVY
ENFRKKVLSVIG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=256, Percent_Identity=26.5625, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI110349734, Length=256, Percent_Identity=26.953125, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI226061853, Length=263, Percent_Identity=26.2357414448669, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226061614, Length=250, Percent_Identity=26.8, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI226061595, Length=223, Percent_Identity=27.3542600896861, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87082439, Length=254, Percent_Identity=25.1968503937008, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=23.6220472440945, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71980746, Length=211, Percent_Identity=25.1184834123223, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28582; Mature: 28582

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERVAYIDVHSHLPEYSDADIERILASIDVVIVSVGEDLESSIRSIEIAEKYKDRIYPC
CCCEEEEEEHHHCCCCCCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCE
IGLHPWNVKSLREALDEAKRIVDLALSRNIKCLGEVGLDTKFVGETIELQREVFRIFLEA
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHH
ARDYKLFLNLHTAGTWEEVFNLLIRYDIVAANFHWYTGPLHLLKDIESAGYTISINPAVK
CCCEEEEEEEECCCCHHHHHHHHHHHHHEEECCEEECCHHHHHHHHHHCCEEEEECCEEE
IQAKHRNVVKAAPISIMLTESDSPYKYRSLELEPRLVADAVAEIAAIKSVEASEVKKLVY
EEECCCCEEEECCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
ENFRKKVLSVIG
HHHHHHHHHHCC
>Mature Secondary Structure
MVERVAYIDVHSHLPEYSDADIERILASIDVVIVSVGEDLESSIRSIEIAEKYKDRIYPC
CCCEEEEEEHHHCCCCCCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCE
IGLHPWNVKSLREALDEAKRIVDLALSRNIKCLGEVGLDTKFVGETIELQREVFRIFLEA
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHH
ARDYKLFLNLHTAGTWEEVFNLLIRYDIVAANFHWYTGPLHLLKDIESAGYTISINPAVK
CCCEEEEEEEECCCCHHHHHHHHHHHHHEEECCEEECCHHHHHHHHHHCCEEEEECCEEE
IQAKHRNVVKAAPISIMLTESDSPYKYRSLELEPRLVADAVAEIAAIKSVEASEVKKLVY
EEECCCCEEEECCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
ENFRKKVLSVIG
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]